YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16128312, gi\|...
Organism:	Escherichia coli K-12
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16128312, gi|....

Description	E-value	Query Range	Subject Range
gi\|74310898, gi\|... - gi\|74310898\|ref\|YP_309317.1\| hypothetical protein SSON_0303 [Shigella sonnei Ss046], gi\|73854375\|gb\|...	164.0	[0..1]	[91..1]
gi\|91070980, gi\|... - gi\|91209406\|ref\|YP_539392.1\| hypothetical protein UTI89_C0360 [Escherichia coli UTI89], gi\|91070980\|...	161.0	[0..1]	[91..1]
EG13597 - uncharacterized protein / Function unknown EG13597 - uncharacterized protein / Function unknown gi\|253972302, gi... - gi\|254160401\|ref\|YP_003043509.1\| hypothetical protein ECB_00282 [Escherichia coli B str. REL606], gi... YAHM_ECOLI - Hypothetical protein yahM - Escherichia coli gi\|251783843, gi... - gi\|251783843\|ref\|YP_002998147.1\| hypothetical protein B21_00286 [Escherichia coli BL21], gi\|24237611... gi\|85674470, gi\|... - gi\|89107200\|ref\|AP_000980.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|254287204, gi... - gi\|254287204\|ref\|YP_003052952.1\| hypothetical protein ECD_00282 [Escherichia coli BL21(DE3)], gi\|253...	146.0	[0..11]	[91..1]
gi\|15800056, gi\|... - gi\|15800056\|ref\|NP_286068.1\| hypothetical protein Z0423 [Escherichia coli O157:H7 EDL933], gi\|125131... gi\|13359838 - gi\|13359838\|dbj\|BAB33804.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi\|13359838 - gi\|13359838\|dbj\|BAB33804.1\| hypothetical protein [Escherichia coli O157:H7] gi\|209744822, gi... - pir\|\|H85526 hypothetical protein Z0423 [imported] - Escherichia coli (strain O157:H7, substrain EDL...	87.0	[0..46]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYGTGFEAS MAVQLFKTLL NQIPLLSSLQ SGTLPLFGYS GWGRPMKKAH TGESGLKWEA  60
   61 KDSSKLIGNK DHALRGLSSP MAVIRQIRLI T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.601	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.558	a.4.3	ARID-like
View	Download	0.512	a.4.3	ARID-like
View	Download	0.512	a.4.3	ARID-like
View	Download	0.463	a.77.1	DEATH domain
View	Download	0.407	a.61.1	Retroviral matrix proteins
View	Download	0.407	a.61.1	Retroviral matrix proteins
View	Download	0.332	a.3.1	Cytochrome c
View	Download	0.312	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain
View	Download	0.258	a.3.1	Cytochrome c
View	Download	0.248	d.52.8	Description not found.
View	Download	0.220	a.74.1	Cyclin-like
View	Download	0.214	d.93.1	SH2 domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits