YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1786461, gi\|1...
Organism:	Escherichia coli K-12
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1786461, gi|1....

Description	E-value	Query Range	Subject Range
gi\|87081711, gi\|... - gi\|90111107\|ref\|NP_414800.2\| CP4-6 prophage; conserved protein [Escherichia coli K12], gi\|87081711\|g... gi\|170079891, gi... - gi\|170079891\|ref\|YP_001729211.1\| CP4-6 prophage; hypothetical protein [Escherichia coli str. K-12 su... gi\|89107140, gi\|... - gi\|89107140\|ref\|AP_000920.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YAGB_ECOLI - Hypothetical protein yagB - Escherichia coli	210.0	[0..10]	[125..1]
gi\|47600624 - gi\|47600624\|emb\|CAE55745.1\| hypothetical protein [Escherichia coli Nissle 1917] gi\|47600624 - gi\|47600624\|emb\|CAE55745.1\| hypothetical protein [Escherichia coli Nissle 1917]	205.0	[0..13]	[118..51]
gi\|75187726, gi\|... - gi\|75187726\|ref\|ZP_00700993.1\| hypothetical protein EcolE_01000963 [Escherichia coli E24377A], gi\|15...	204.0	[0..13]	[115..15]
gi\|70608388 - gi\|70608388\|gb\|AAZ04460.1\| conserved hypothetical protein [Escherichia coli] gi\|237706322, gi... - gi\|237706322\|ref\|ZP_04536803.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|117625241, gi... - gi\|117625241\|ref\|YP_854324.1\| hypothetical protein APECO1_3487 [Escherichia coli APEC O1], gi\|115514...	203.0	[0..14]	[115..36]
gi\|26249511, gi\|... - gi\|26249511\|ref\|NP_755551.1\| hypothetical protein c3676 [Escherichia coli CFT073], gi\|26109919\|gb\|AA...	202.0	[0..16]	[116..18]
gi\|75211006 - gi\|75211006\|ref\|ZP_00711119.1\| hypothetical protein EcolB_01001803 [Escherichia coli B171] gi\|195183235 - gi\|195183235\|dbj\|BAG66778.1\| predicted protein [Escherichia coli O111:H-]	201.0	[0..13]	[115..15]
gi\|91210176, gi\|... - gi\|91210176\|ref\|YP_540162.1\| intergenic-region protein [Escherichia coli UTI89], gi\|91071750\|gb\|ABE0...	200.0	[0..14]	[115..46]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFFNRNKIM NKDSTQTWGL KRDITPCFGA RLVQEGHRLH FLADRAGFTG SFSEVQTLQL  60
   61 DEAFPHFVAH LELMLLSCEL NPRYAHCVTL YRNGLTGEAD TLGSHGYVYI AILNRHGFNR 120
  121 HLRVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	2inwA
Description:	No description for 2inwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits