YRC Public Data Repository - Protein Structure Prediction

Protein:	INSO1_ECOLI
Organism:	Escherichia coli
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INSO1_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82778025, gi\|... - gi\|82778025\|ref\|YP_404374.1\| IS911 ORF2 [Shigella dysenteriae Sd197], gi\|81242173\|gb\|ABB62883.1\| IS9...	137.0	[0..1]	[140..1]
gi\|23306900 - gi\|23306900\|emb\|CAD48418.1\| putative transposase [Escherichia coli]	134.0	[0..1]	[140..111]
gi\|30061786, gi\|... - gi\|30061786\|ref\|NP_835957.1\| IS911 orfA [Shigella flexneri 2a str. 2457T], gi\|30040028\|gb\|AAP15762.1...	133.0	[0..1]	[140..72]
gi\|41057343, gi\|... - gi\|41057343\|ref\|NP_958229.1\| putative transposase OrfB [Enterobacteria phage Sf6], gi\|33334222\|gb\|AA...	133.0	[0..1]	[140..28]
gi\|74312514, gi\|... - gi\|74314751\|ref\|YP_313170.1\| IS911 ORF2 [Shigella sonnei Ss046], gi\|74314256\|ref\|YP_312675.1\| IS911 ...	133.0	[0..1]	[140..1]
gi\|24051339, gi\|... - gi\|24112457\|ref\|NP_706967.1\| IS911 ORF2 [Shigella flexneri 2a str. 301], gi\|24051339\|gb\|AAN42674.1\| ...	133.0	[0..1]	[140..1]
gi\|13310776, gi\|... - gi\|58045152\|gb\|AAW64922.1\| IS911 ORF2 [Shigella flexneri], gi\|13449228\|ref\|NP_085444.1\| IS911 orfB [... gi\|13310776\|gb\|A... - IS911 orfB [Shigella flexneri]	133.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLCHVFGV HRSSYKYWKN RPEKPDGRRA VLRSQVLELH GISHGSAGAR SIATMATQRG  60
   61 YQMGRWLAGR LMKELGLVSC QQPTHRYKRG GHEHVAIPNH LERQFAVTEP NQVWCGDVTY 120
  121 SVPGVQGGHG CLNEPRVCLE Y

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.99
Match:	1u78A
Description:	Structure of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.232528774113254	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: