YRC Public Data Repository - Protein Structure Prediction

Protein:	LPXD_ECOLI
Organism:	Escherichia coli
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPXD_ECOLI.

Description	E-value	Query Range	Subject Range
LPXD_PSEP1 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lpxD PE...	283.0	[0..3]	[339..4]
LPXD_ECOUT - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase OS=Escherichia coli (strain UTI89 / UPEC) ... gi\|237704338, gi... - gi\|237704338\|ref\|ZP_04534819.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheric... gi\|218557120, gi... - gi\|218557120\|ref\|YP_002390033.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheri... gi\|117622464, gi... - gi\|117622464\|ref\|YP_851377.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escherichi...	283.0	[0..1]	[341..1]
LPXD_PSEPK - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas putida (strain KT2440) GN=lpxD PE=3 SV=1	283.0	[0..3]	[339..4]
LPXD_PSEAB - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lpxD PE=3...	283.0	[0..3]	[338..6]
gi\|194547545, gi... - gi\|84319626\|ref\|ZP_00968020.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [...	282.0	[0..3]	[338..6]
gi\|189371097, gi... - gi\|189371097\|gb\|EDU89513.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escherichia ... gi\|189000375, gi... - gi\|189000375\|gb\|EDU69361.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escherichia ... gi\|195939875 - gi\|195939875\|ref\|ZP_03085257.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheric... gi\|170683962, gi... - gi\|170683962\|ref\|YP_001742307.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheri... gi\|208733895, gi... - gi\|208812618\|ref\|ZP_03253947.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheric... gi\|208729167, gi... - gi\|208809366\|ref\|ZP_03251703.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheric... gi\|209159723, gi... - gi\|209398323\|ref\|YP_002268787.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheri... gi\|208821208, gi... - gi\|208821208\|ref\|ZP_03261528.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheric... gi\|189357029, gi... - gi\|189357029\|gb\|EDU75448.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escherichia ... gi\|188013920, gi... - gi\|188013920\|gb\|EDU52042.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escherichia ... LPXD_ECOL6 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase OS=Escherichia coli O6 GN=lpxD PE=3 SV=2 LPXD_SHIFL - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase OS=Shigella flexneri GN=lpxD PE=3 SV=2 gi\|24111614, gi\|... - gi\|24111614\|ref\|NP_706124.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Shigella fl... gi\|25322465, gi\|... - pir\|\|E85502 hypothetical protein lpxD [imported] - Escherichia coli (strain O157:H7, substrain EDL9... LPXD_ECO57 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase OS=Escherichia coli O157:H7 GN=lpxD PE=3 S... gi\|30039978, gi\|... - gi\|30061736\|ref\|NP_835907.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Shigella fl... gi\|218425618, gi... - gi\|218688054\|ref\|YP_002396266.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheri... gi\|12512907, gi\|... - gi\|15799861\|ref\|NP_285873.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escherichia... gi\|217321681, gi... - gi\|217325460\|ref\|ZP_03441544.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheric... gi\|218703433, gi... - gi\|218703433\|ref\|YP_002410952.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheri... gi\|15829435, gi\|... - gi\|15829435\|ref\|NP_308208.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escherichia... gi\|218368585, gi... - gi\|218698599\|ref\|YP_002406228.1\| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Escheri... gi\|192959035, gi... - gi\|75238882\|ref\|ZP_00722864.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [... gi\|75240232, gi\|... - gi\|75240232\|ref\|ZP_00724179.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [... gi\|187430468, gi... - gi\|75176476\|ref\|ZP_00696613.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [... gi\|75210502, gi\|... - gi\|75210502\|ref\|ZP_00710653.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [... LPXD_SHIBS - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase OS=Shigella boydii serotype 4 (strain Sb22... LPXD_ECOL5 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase OS=Escherichia coli O6:K15:H31 (strain 536... gi\|75258830, gi\|... - gi\|75258830\|ref\|ZP_00730220.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [... LPXD_SHISS - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase OS=Shigella sonnei (strain Ss046) GN=lpxD ... LPXD_ECOL6 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase OS=Escherichia coli O6:H1 (strain CFT073 /... gi\|227838046, gi... - gi\|227884908\|ref\|ZP_04002713.1\| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase [Escheric... gi\|254791312, gi... - gi\|254791312\|ref\|YP_003076149.1\| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase [Escheri...	281.0	[0..1]	[341..1]
LPXD_PSEA8 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas aeruginosa (strain LESB58) GN=lpxD PE=3 SV=... LPXD_PSEAE - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase OS=Pseudomonas aeruginosa GN=lpxD PE=3 SV... gi\|126195722, gi... - gi\|84325652\|ref\|ZP_00973686.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [... LPXD_PSEAE - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|107103160 - gi\|107103160\|ref\|ZP_01367078.1\| hypothetical protein PaerPA_01004229 [Pseudomonas aeruginosa PACS2]	281.0	[0..3]	[338..6]
gi\|83568993 - gi\|83568993\|ref\|ZP_00920457.1\| COG1044: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [...	281.0	[0..1]	[341..1]
gi\|95112172 - gi\|95112172\|emb\|CAK16899.1\| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase [Pseudomonas en... LPXD_PSEE4 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas entomophila (strain L48) GN=lpxD PE=3 SV=1	280.0	[0..3]	[339..4]
LPXD_PSEA7 - UDP-3-O-acylglucosamine N-acyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=lpxD PE=3 SV=1	280.0	[0..3]	[338..6]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIRLADLA QQLDAELHGD GDIVITGVAS MQSAQTGHIT FMVNPKYREH LGLCQASAVV  60
   61 MTQDDLPFAK SAALVVKNPY LTYARMAQIL DTTPQPAQNI APSAVIDATA KLGNNVSIGA 120
  121 NAVIESGVEL GDNVIIGAGC FVGKNSKIGA GSRLWANVTI YHEIQIGQNC LIQSGTVVGA 180
  181 DGFGYANDRG NWVKIPQIGR VIIGDRVEIG ACTTIDRGAL DDTIIGNGVI IDNQCQIAHN 240
  241 VVIGDNTAVA GGVIMAGSLK IGRYCMIGGA SVINGHMEIC DKVTVTGMGM VMRPITEPGV 300
  301 YSSGIPLQPN KVWRKTAALV MNIDDMSKRL KSLERKVNQQ D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	2iu8A
Description:	No description for 2iu8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits