YRC Public Data Repository - Protein Structure Prediction

Protein:	ARAB_ECOLI
Organism:	Escherichia coli
Length:	566 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARAB_ECOLI.

Description	E-value	Query Range	Subject Range
GLPK2_THEMA, GLK... - Glycerol kinase 2 OS=Thermotoga maritima GN=glpK2 PE=3 SV=2, (Q9X1E4) Glycerol kinase 2 (EC 2.7.1.30... GLPK2_THEMA - Glycerol kinase 2 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=glpK2 ...	523.0	[0..1]	[552..1]
gi\|254479176, gi... - gi\|254479176\|ref\|ZP_05092524.1\| glycerol kinase [Carboxydibrachium pacificum DSM 12653], gi\|22348899... GLPK_CALS4 - Glycerol kinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 ... GLPK_THETN - Glycerol kinase OS=Thermoanaerobacter tengcongensis GN=glpK PE=3 SV=1	508.0	[0..2]	[552..3]
gi\|7434247 - gi\|7434247\|pir\|\|C72254 glycerol kinase - Thermotoga maritima (strain MSB8) gi\|15644181, gi\|... - gi\|4981995\|gb\|AAD36500.1\|AE001795_3 glycerol kinase [Thermotoga maritima MSB8], gi\|15644181\|ref\|NP_2...	506.0	[0..1]	[538..1]
GLPK_CARHZ - Glycerol kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=gl...	505.0	[0..2]	[549..4]
gi\|242257967, gi... - gi\|242257967\|ref\|ZP_04802809.1\| glycerol kinase [Thermoanaerobacter sp. X513], gi\|242230500\|gb\|EES32... GLPK_THEPX - Glycerol kinase OS=Thermoanaerobacter sp. (strain X514) GN=glpK PE=3 SV=1	502.0	[0..2]	[552..3]
GLPK_THEP3 - Glycerol kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glpK PE=3 SV=1 gi\|241903306, gi... - gi\|241903306\|ref\|ZP_04788032.1\| glycerol kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi...	498.0	[0..2]	[552..3]
GLPK_BACSU - Glycerol kinase OS=Bacillus subtilis GN=glpK PE=1 SV=1 gi\|2633252, gi\|1... - gi\|2633252\|emb\|CAB12757.1\| glycerol kinase [Bacillus subtilis subsp. subtilis str. 168], gi\|16077994...	496.0	[0..2]	[549..3]
gi\|23344713 - gi\|23344713\|gb\|AAN28669.1\| glycerol kinase [Bacillus subtilis var. natto]	491.0	[0..2]	[549..3]
gi\|115250422, gi... - gi\|126698985\|ref\|YP_001087882.1\| glycerol kinase [Clostridium difficile 630], gi\|115250422\|emb\|CAJ68...	490.0	[0..2]	[552..4]
gi\|145633745, gi... - gi\|145633745\|ref\|ZP_01789470.1\| glycerol kinase [Haemophilus influenzae 3655], gi\|144985404\|gb\|EDJ92... gi\|46128908 - gi\|46128908\|ref\|ZP_00154554.2\| COG0554: Glycerol kinase [Haemophilus influenzae R2846]	488.0	[0..2]	[552..5]

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Predicted Domain #1

Region A:
Residues: [1-566]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIAIGLDFG SDSVRALAVD CATGEEIATS VEWYPRWQKG QFCDAPNNQF RHHPRDYIES  60
   61 MEAALKTVLA ELSVEQRAAV VGIGVDSTGS TPAPIDADGN VLALRPEFAE NPNAMFVLWK 120
  121 DHTAVEEAEE ITRLCHAPGN VDYSRYIGGI YSSEWFWAKI LHVTRQDSAV AQSAASWIEL 180
  181 CDWVPALLSG TTRPQDIRRG RCSAGHKSLW HESWGGLPPA SFFDELDPIL NRHLPSPLFT 240
  241 DTWTADIPVG TLCPEWAQRL GLPESVVISG GAFDCHMGAV GAGAQPNALV KVIGTSTCDI 300
  301 LIADKQSVGE RAVKGICGQV DGSVVPGFIG LEAGQSAFGD IYAWFGRVLG WPLEQLAAQH 360
  361 PELKTQINAS QKQLLPALTE AWAKNPSLDH LPVVLDWFNG RRTPNANQRL KGVITDLNLA 420
  421 TDAPLLFGGL IAATAFGARA IMECFTDQGI AVNNVMALGG IARKNQVIMQ ACCDVLNRPL 480
  481 QIVASDQCCA LGAAIFAAVA AKVHADIPSA QQKMASAVEK TLQPCSEQAQ RFEQLYRRYQ 540
  541 QWAMSAEQHY LPTSAPAQAA QAVATL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	136.0
Match:	2p3rA
Description:	No description for 2p3rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits