YRC Public Data Repository - Protein Structure Prediction

Protein:	RLUA_ECOLI
Organism:	Escherichia coli
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLUA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|90961803, gi\|... - gi\|90961803\|ref\|YP_535719.1\| ribosomal large subunit pseudouridine synthase D [Lactobacillus salivar...	256.0	[0..7]	[218..70]
gi\|20807974, gi\|... - gi\|20807974\|ref\|NP_623145.1\| pseudouridylate synthase, 23S RNA-specific [Thermoanaerobacter tengcong... gi\|20807974 - gi\|20807974\|ref\|NP_623145.1\| Pseudouridylate synthase, 23S RNA-specific [Thermoanaerobacter tengcong...	254.0	[0..2]	[218..70]
gi\|229330881, gi... - gi\|229498191\|ref\|ZP_04391888.1\| pseudouridine synthase, RluA family [Geobacillus sp. Y412MC52], gi\|2... gi\|56379523, gi\|... - gi\|56419681\|ref\|YP_146999.1\| hypothetical protein GK1146 [Geobacillus kaustophilus HTA426], gi\|56379... gi\|221087579, gi... - gi\|221087579\|ref\|ZP_03557116.1\| pseudouridine synthase, RluA family [Geobacillus sp. Y412MC61], gi\|2...	254.0	[0..2]	[218..68]
gi\|76587739, gi\|... - gi\|76796894\|ref\|ZP_00779243.1\| Pseudouridine synthase, RluD [Thermoanaerobacter ethanolicus ATCC 332...	252.0	[0..9]	[218..78]
gi\|114843803, gi... - gi\|114843803\|ref\|ZP_01454263.1\| Pseudouridine synthase, RluD [Thermoanaerobacter ethanolicus X514], ...	252.0	[0..9]	[218..78]
gi\|28211276, gi\|... - gi\|28211276\|ref\|NP_782220.1\| ribosomal large subunit pseudouridine synthase D [Clostridium tetani E8...	250.0	[0..6]	[218..74]
gi\|81428560, gi\|... - gi\|81428560\|ref\|YP_395560.1\| pseudouridylate synthase, 23S rRNA-specific [Lactobacillus sakei subsp....	250.0	[0..2]	[218..67]
gi\|88947356, gi\|... - gi\|88947356\|ref\|ZP_01150353.1\| Pseudouridine synthase, RluD [Desulfotomaculum reducens MI-1], gi\|889...	250.0	[0..2]	[218..68]
gi\|78044742, gi\|... - gi\|78044742\|ref\|YP_360337.1\| ribosomal large subunit pseudouridine synthase A [Carboxydothermus hydr...	249.0	[0..1]	[218..67]
gi\|48858431, gi\|... - gi\|67916216\|ref\|ZP_00509934.1\| Pseudouridine synthase, RluD [Clostridium thermocellum ATCC 27405], g... gi\|196253292, gi... - gi\|196253292\|ref\|ZP_03151926.1\| pseudouridine synthase, RluA family [Clostridium thermocellum DSM 41...	249.0	[0..1]	[218..63]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMENYNPPQ EPWLVILYQD DHIMVVNKPS GLLSVPGRLE EHKDSVMTRI QRDYPQAESV  60
   61 HRLDMATSGV IVVALTKAAE RELKRQFRER EPKKQYVARV WGHPSPAEGL VDLPLICDWP 120
  121 NRPKQKVCYE TGKPAQTEYE VVEYAADNTA RVVLKPITGR SHQLRVHMLA LGHPILGDRF 180
  181 YASPEARAMA PRLLLHAEML TITHPAYGNS MTFKAPADF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.69897
Match:	2i82A
Description:	No description for 2i82A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits