YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15026577, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15026577, gi|....

Description	E-value	Query Range	Subject Range
gi\|71740491, gi\|... - gi\|71839105\|ref\|ZP_00678859.1\| NADPH-dependent FMN reductase [Pelobacter propionicus DSM 2379], gi\|7...	185.0	[0..1]	[211..1]
gi\|82747766, gi\|... - gi\|82747766\|ref\|ZP_00910259.1\| multimeric flavodoxin WrbA family protein [Clostridium beijerincki NC...	182.0	[0..1]	[211..1]
gi\|34483258 - gi\|34483258\|emb\|CAE10256.1\| MULTIMERIC FLAVODOXIN WRBA FAMILY PROTEIN [Wolinella succinogenes] gi\|34557541 - gi\|34557541\|ref\|NP_907356.1\| multimeric flavodoxin WrbA family protein [Wolinella succinogenes DSM 1...	181.0	[0..1]	[211..1]
gi\|146297399, gi... - gi\|82499433\|ref\|ZP_00884878.1\| NADPH-dependent FMN reductase domain protein [Caldicellulosiruptor sa...	179.0	[0..1]	[211..1]
gi\|78042813, gi\|... - gi\|78042813\|ref\|YP_360548.1\| FMN reductase, NADPH-dependent [Carboxydothermus hydrogenoformans Z-290...	178.0	[0..1]	[211..1]
gi\|15026423, gi\|... - gi\|15896584\|ref\|NP_349933.1\| multimeric flavodoxin WrbA family protein [Clostridium acetobutylicum A... gi\|25329240 - pir\|\|F97310 multimeric flavodoxin WrbA family protein [imported] - Clostridium acetobutylicum	174.0	[0..1]	[211..1]
gi\|39982052, gi\|... - gi\|39995290\|ref\|NP_951241.1\| NADPH-dependent FMN reductase domain-containing protein [Geobacter sulf...	174.0	[0..1]	[211..1]
gi\|77544791, gi\|... - gi\|77918708\|ref\|YP_356523.1\| putative NADPH-dependent FMN reductase [Pelobacter carbinolicus DSM 238...	171.0	[0..1]	[202..1]
gi\|77685261, gi\|... - gi\|77685261\|ref\|ZP_00800666.1\| NADPH-dependent FMN reductase [Alkaliphilus metalliredigenes QYMF], g...	170.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVAFNGSP KKNGNTNEAI KAVAAELEKE NIEVEIIHVG NKVIRGCLDC GGCSRNMNER  60
   61 CVMKNDEVND WIQKMKEADG IILGSPVHYS AIAGTMKSFL DRAFLVTSVN NGMLRHKVGA 120
  121 SVVAVRRSGG IPVFNQLNNY INYSEMMMPT SNYWNVIHGT KPGEATQDEE GMQIMRVLGK 180
  181 NMAWLLKTID SSKNNVKENE IEEKIFTNFI R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	2fzvA
Description:	Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: