YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15026423, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15026423, gi|....

Description	E-value	Query Range	Subject Range
gi\|82745986, gi\|... - gi\|82745986\|ref\|ZP_00908495.1\| multimeric flavodoxin WrbA family protein [Clostridium beijerincki NC...	178.0	[0..1]	[208..1]
gi\|71740491, gi\|... - gi\|71839105\|ref\|ZP_00678859.1\| NADPH-dependent FMN reductase [Pelobacter propionicus DSM 2379], gi\|7...	175.0	[0..1]	[208..1]
gi\|34483258 - gi\|34483258\|emb\|CAE10256.1\| MULTIMERIC FLAVODOXIN WRBA FAMILY PROTEIN [Wolinella succinogenes] gi\|34557541 - gi\|34557541\|ref\|NP_907356.1\| multimeric flavodoxin WrbA family protein [Wolinella succinogenes DSM 1...	174.0	[0..1]	[208..1]
gi\|25329242 - pir\|\|A97328 multimeric flavodoxin WrbA family protein [imported] - Clostridium acetobutylicum gi\|15026577, gi\|... - gi\|15896723\|ref\|NP_350072.1\| multimeric flavodoxin WrbA family protein [Clostridium acetobutylicum A...	172.0	[0..1]	[208..1]
gi\|18144575, gi\|... - gi\|18309897\|ref\|NP_561831.1\| NADPH-dependent FMN reductase [Clostridium perfringens str. 13], gi\|181...	167.0	[0..1]	[208..1]
gi\|39982052, gi\|... - gi\|39995290\|ref\|NP_951241.1\| NADPH-dependent FMN reductase domain-containing protein [Geobacter sulf...	166.0	[0..1]	[208..1]
gi\|110684469, gi... - gi\|110803968\|ref\|YP_698194.1\| NADPH-dependent FMN reductase [Clostridium perfringens SM101], gi\|1106...	166.0	[0..1]	[208..1]
gi\|254975309 - gi\|254975309\|ref\|ZP_05271781.1\| putative NADPH-dependent FMN reductase [Clostridium difficile QCD-66... gi\|145954538, gi... - gi\|90574856\|ref\|ZP_01231347.1\| hypothetical protein CdifQ_02001782 [Clostridium difficile QCD-32g58]... gi\|255092700 - gi\|255092700\|ref\|ZP_05322178.1\| putative NADPH-dependent FMN reductase [Clostridium difficile CIP 10... gi\|255314439 - gi\|255314439\|ref\|ZP_05356022.1\| putative NADPH-dependent FMN reductase [Clostridium difficile QCD-76... gi\|255517115 - gi\|255517115\|ref\|ZP_05384791.1\| putative NADPH-dependent FMN reductase [Clostridium difficile QCD-97... gi\|255650220 - gi\|255650220\|ref\|ZP_05397122.1\| putative NADPH-dependent FMN reductase [Clostridium difficile QCD-37...	166.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLLINGSP HAKGCTYTAL SEVAKALEEE NIETEIFQIG TKPVRGCIGC GTCSKTGSGK  60
   61 CVFDDDTLNA GLEKAKTADG FIFGSPVHYA AASGALTSFL DRFFYAGKDF AYKPGAAIVS 120
  121 CRRGGAAAAF DQLNKYFTIA NMPIVSSQYW NMVHGNTPEE VKQDLEGMQT MRTLGKNMAW 180
  181 LLKSIQAGKE AGVKLPEKEQ TIRTNFIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	2fzvA
Description:	Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: