YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25335016
Organism:	Clostridium acetobutylicum
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25335016.

Description	E-value	Query Range	Subject Range
gi\|42737025, gi\|... - gi\|42781104\|ref\|NP_978351.1\| hypothetical protein BCE_2035 [Bacillus cereus ATCC 10987], gi\|42737025...	179.0	[0..1]	[198..1]
gi\|47553328, gi\|... - gi\|47569980\|ref\|ZP_00240643.1\| nitroreductase family protein [Bacillus cereus G9241], gi\|47553328\|gb...	178.0	[0..1]	[198..1]
gi\|49332113, gi\|... - gi\|49480557\|ref\|YP_036117.1\| nitroreductase family protein [Bacillus thuringiensis serovar konkukian...	176.0	[0..1]	[198..1]
gi\|254755504 - gi\|254755504\|ref\|ZP_05207538.1\| hypothetical protein BantV_23792 [Bacillus anthracis str. Vollum] gi\|254760040 - gi\|254760040\|ref\|ZP_05212064.1\| hypothetical protein BantA9_17151 [Bacillus anthracis str. Australia... gi\|254734849 - gi\|254734849\|ref\|ZP_05192561.1\| hypothetical protein BantWNA_06730 [Bacillus anthracis str. Western ... gi\|254741250 - gi\|254741250\|ref\|ZP_05198938.1\| hypothetical protein BantKB_09617 [Bacillus anthracis str. Kruger B] gi\|21399828 - ref\|NP_655813.1\| Nitroreductase, Nitroreductase family [Bacillus anthracis str. A2012] gi\|49178750, gi\|... - gi\|49184823\|ref\|YP_028075.1\| hypothetical protein BAS1811 [Bacillus anthracis str. Sterne], gi\|49178... gi\|47502394, gi\|... - gi\|47527246\|ref\|YP_018595.1\| hypothetical protein GBAA1951 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30256609, gi\|... - gi\|30261983\|ref\|NP_844360.1\| hypothetical protein BA1951 [Bacillus anthracis str. Ames], gi\|30256609... gi\|254684546 - gi\|254684546\|ref\|ZP_05148406.1\| hypothetical protein BantC_11905 [Bacillus anthracis str. CNEVA-9066... gi\|254721304 - gi\|254721304\|ref\|ZP_05183094.1\| hypothetical protein BantA1_02450 [Bacillus anthracis str. A1055]	176.0	[0..1]	[198..1]
gi\|165870227, gi... - gi\|165870227\|ref\|ZP_02214883.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|227005446, gi... - gi\|227815229\|ref\|YP_002815238.1\| hypothetical protein BAMEG_2640 [Bacillus anthracis str. CDC 684], ... gi\|167531945, gi... - gi\|167633133\|ref\|ZP_02391459.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|229602608, gi... - gi\|229602608\|ref\|YP_002866354.1\| hypothetical protein BAA_2020 [Bacillus anthracis str. A0248], gi\|2... gi\|170129051, gi... - gi\|170706049\|ref\|ZP_02896511.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|172083391, gi... - gi\|177650930\|ref\|ZP_02933827.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|167638423, gi... - gi\|167638423\|ref\|ZP_02396700.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|170686612, gi... - gi\|170686612\|ref\|ZP_02877833.1\| conserved hypothetical protein [Bacillus anthracis str. A0465], gi\|1... gi\|190566381, gi... - gi\|190566381\|ref\|ZP_03019299.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ... gi\|65319266 - gi\|65319266\|ref\|ZP_00392225.1\| COG3560: Predicted oxidoreductase related to nitroreductase [Bacillus...	175.0	[0..1]	[198..2]
gi\|51976935, gi\|... - gi\|52143466\|ref\|YP_083363.1\| nitroreductase family protein [Bacillus cereus E33L], gi\|51976935\|gb\|AA...	175.0	[0..1]	[198..1]
gi\|29895641, gi\|... - gi\|30020091\|ref\|NP_831722.1\| nitroreductase family protein [Bacillus cereus ATCC 14579], gi\|29895641...	173.0	[0..1]	[198..2]

Back

Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDFYEAVK KRRTIYGIGK ESPISDERIK EIVELLVKET PSSFNSQSSR VVVLFGKNHD  60
   61 KLWEITKETL RKIVPEGNFS STEEKINSFK SGYGTILYFE DQNVIKSLQD QFQLYKDNFP 120
  121 VWSEQSSGML QINIWNALSL EGLGASLQHY NPLIDDAVRD EWHIPQNWKL IGQMPFGKPT 180
  181 ADPGDKDFIP IDSRVKFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.045757
Match:	1ywqA
Description:	Crystal structure of a nitroreductase family protein from Bacillus cereus ATCC 14579
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.88351700678	bayes_pls_golite062009
NAD(P)H nitroreductase activity	1.73743442947569	bayes_pls_golite062009
catalytic activity	1.11149969304282	bayes_pls_golite062009
protein binding	0.385179389448981	bayes_pls_golite062009
oxidoreductase activity	0.27929339949687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: