YRC Public Data Repository - Protein Structure Prediction

Protein:	RL16_CLOAB
Organism:	Clostridium acetobutylicum
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL16_CLOAB.

Description	E-value	Query Range	Subject Range
RL16_CLOTE - 50S ribosomal protein L16 OS=Clostridium tetani GN=rplP PE=3 SV=1 RL16_CLOTE - 50S ribosomal protein L16 OS=Clostridium tetani (strain Massachusetts / E88) GN=rplP PE=3 SV=1	203.0	[0..1]	[147..1]
RL16_SYNJA - 50S ribosomal protein L16 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplP PE=3 SV=1 gi\|86605859 - gi\|86605859\|ref\|YP_474622.1\| ribosomal protein L16 [Cyanobacteria bacterium Yellowstone A-Prime]	201.0	[0..1]	[139..1]
RL16_SYNJB - 50S ribosomal protein L16 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rplP PE=3 SV=1 gi\|86610035 - gi\|86610035\|ref\|YP_478797.1\| ribosomal protein L16 [Cyanobacteria bacterium Yellowstone B-Prime]	199.0	[0..1]	[138..1]
RL16_CLOB8 - 50S ribosomal protein L16 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplP PE=3 ...	199.0	[0..1]	[144..1]
RL16_PROM4 - 50S ribosomal protein L16 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplP PE=3 SV=1	199.0	[0..1]	[132..1]
RL16_CLOTH - 50S ribosomal protein L16 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / ... gi\|196253851, gi... - gi\|196253851\|ref\|ZP_03152456.1\| ribosomal protein L16 [Clostridium thermocellum DSM 4150], gi\|196196...	199.0	[0..1]	[146..1]
RL16_THETN - 50S ribosomal protein L16 OS=Thermoanaerobacter tengcongensis GN=rplP PE=3 SV=1 RL16_CALS4 - 50S ribosomal protein L16 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / ...	198.0	[0..1]	[146..1]
RL16_DESHY - 50S ribosomal protein L16 OS=Desulfitobacterium hafniense (strain Y51) GN=rplP PE=3 SV=1	198.0	[0..1]	[146..1]
RL16_THEP3 - 50S ribosomal protein L16 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplP P... gi\|241883317, gi... - gi\|241904334\|ref\|ZP_04789036.1\| ribosomal protein L16 [Thermoanaerobacter brockii subsp. finnii Ako-...	197.0	[0..1]	[147..1]
RL16_MOOTA - 50S ribosomal protein L16 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplP PE=3 SV=1	197.0	[0..1]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMPKRVKHR KVQRGRMKGK ATRGNFIAYG DFAIQATECA WITSNQIEAA RIAINRYVKR  60
   61 GGKLWIKIFP DKPVTQKPAE TRMGSGKGSP EYWVAVVKPG RVLFEMSDVT EEQAREAFRL 120
  121 ASHKLPIKTK FVTRKDFEEM GGEANEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.045757
Match:	1njmK
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.80692012906383	bayes_pls_golite062009
structural molecule activity	9.22985932721781	bayes_pls_golite062009
peptidyltransferase activity	3.65229345531491	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.205796305154945	bayes_pls_golite062009
catalytic activity	0.145440139643068	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: