YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25308387
Organism:	Clostridium acetobutylicum
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25308387.

Description	E-value	Query Range	Subject Range
gi\|227896805, gi... - gi\|227896805\|ref\|ZP_04014610.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|254556053, gi... - gi\|254556053\|ref\|YP_003062470.1\| ABC transporter, permease protein [Lactobacillus plantarum JDM1], g... gi\|28377869, gi\|... - gi\|28377869\|ref\|NP_784761.1\| ABC transporter, permease protein [Lactobacillus plantarum WCFS1], gi\|2...	210.0	[0..1]	[265..1]
gi\|227555886, gi... - gi\|227555886\|ref\|ZP_03985933.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|29342341, gi\|... - gi\|29374883\|ref\|NP_814036.1\| cobalt transport family protein [Enterococcus faecalis V583], gi\|293423...	203.0	[0..1]	[265..1]
gi\|206732814, gi... - gi\|206972240\|ref\|ZP_03233187.1\| cobalt transport protein [Bacillus cereus AH1134], gi\|206732814\|gb\|E... gi\|29893950, gi\|... - gi\|30018410\|ref\|NP_830041.1\| cobalt transport protein cbiQ [Bacillus cereus ATCC 14579], gi\|29893950...	200.0	[0..2]	[266..1]
gi\|68194964, gi\|... - gi\|69247199\|ref\|ZP_00604261.1\| Cobalt transport protein [Enterococcus faecium DO], gi\|68194964\|gb\|EA... gi\|48824751 - ref\|ZP_00286090.1\| COG0619: ABC-type cobalt transport system, permease component CbiQ and related tr...	200.0	[0..1]	[265..1]
gi\|218901346, gi... - gi\|218901346\|ref\|YP_002449180.1\| cobalt transport protein [Bacillus cereus AH820], gi\|218535401\|gb\|A... gi\|30260332, gi\|... - gi\|30260332\|ref\|NP_842709.1\| cobalt transport protein [Bacillus anthracis str. Ames], gi\|30253653\|gb... gi\|47525397, gi\|... - gi\|47525397\|ref\|YP_016746.1\| cobalt transport protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|21398099 - ref\|NP_654084.1\| CbiQ, Cobalt transport protein [Bacillus anthracis str. A2012] gi\|225788254, gi... - gi\|225862193\|ref\|YP_002747571.1\| cobalt transport protein [Bacillus cereus 03BB102], gi\|225788254\|gb... gi\|118415134, gi... - gi\|118475909\|ref\|YP_893060.1\| cobalt ABC transporter, permease component [Bacillus thuringiensis str... gi\|227002880, gi... - gi\|227812814\|ref\|YP_002812823.1\| cobalt transport protein [Bacillus anthracis str. CDC 684], gi\|2270... gi\|254726280 - gi\|254726280\|ref\|ZP_05188062.1\| cobalt transport protein [Bacillus anthracis str. A1055] gi\|254735285 - gi\|254735285\|ref\|ZP_05192993.1\| cobalt transport protein [Bacillus anthracis str. Western North Amer... gi\|229603881, gi... - gi\|229603881\|ref\|YP_002864792.1\| cobalt transport protein [Bacillus anthracis str. A0248], gi\|229268... gi\|254686640 - gi\|254686640\|ref\|ZP_05150499.1\| cobalt transport protein [Bacillus anthracis str. CNEVA-9066] gi\|52145078, gi\|... - gi\|52145078\|ref\|YP_081751.1\| cobalt ABC transporter permease [Bacillus cereus E33L], gi\|51978547\|gb\|... gi\|254756840 - gi\|254756840\|ref\|ZP_05208868.1\| cobalt transport protein [Bacillus anthracis str. Australia 94] gi\|49183175, gi\|... - gi\|49183175\|ref\|YP_026427.1\| cobalt transport protein [Bacillus anthracis str. Sterne], gi\|49177102\|... gi\|254739477 - gi\|254739477\|ref\|ZP_05197175.1\| cobalt transport protein [Bacillus anthracis str. Kruger B] gi\|49481686, gi\|... - gi\|49481686\|ref\|YP_034492.1\| cobalt ABC transporter permease [Bacillus thuringiensis serovar konkuki... gi\|254755531 - gi\|254755531\|ref\|ZP_05207565.1\| cobalt transport protein [Bacillus anthracis str. Vollum] gi\|196041150, gi... - gi\|196041150\|ref\|ZP_03108446.1\| cobalt transport protein [Bacillus cereus NVH0597-99], gi\|196028085\|... gi\|196022927, gi... - gi\|196046182\|ref\|ZP_03113409.1\| cobalt transport protein [Bacillus cereus 03BB108], gi\|196022927\|gb\|... gi\|190567400, gi... - gi\|190567400\|ref\|ZP_03020314.1\| cobalt transport protein [Bacillus anthracis Tsiankovskii-I], gi\|190... gi\|196036006, gi... - gi\|196036006\|ref\|ZP_03103407.1\| cobalt transport protein [Bacillus cereus W], gi\|195991375\|gb\|EDX553... gi\|170125624, gi... - gi\|170709468\|ref\|ZP_02899871.1\| cobalt transport protein [Bacillus anthracis str. A0389], gi\|1701256... gi\|172079842, gi... - gi\|177656194\|ref\|ZP_02937175.1\| cobalt transport protein [Bacillus anthracis str. A0174], gi\|1720798... gi\|167642073, gi... - gi\|167642073\|ref\|ZP_02400297.1\| cobalt transport protein [Bacillus anthracis str. A0193], gi\|1675099... gi\|170689679, gi... - gi\|170689679\|ref\|ZP_02880857.1\| cobalt transport protein [Bacillus anthracis str. A0465], gi\|1706663... gi\|164710914, gi... - gi\|165873346\|ref\|ZP_02217947.1\| cobalt transport protein [Bacillus anthracis str. A0488], gi\|1647109...	200.0	[0..2]	[266..1]
gi\|218544229, gi... - gi\|218895276\|ref\|YP_002443687.1\| cobalt transport protein [Bacillus cereus G9842], gi\|218544229\|gb\|A... gi\|75764617, gi\|... - gi\|75764617\|ref\|ZP_00744061.1\| Cobalt transport protein cbiQ [Bacillus thuringiensis serovar israele...	200.0	[0..2]	[266..1]
gi\|169347090, gi... - gi\|169347090\|ref\|ZP_02866032.1\| cobalt ABC transporter, permease protein [Clostridium perfringens C ... gi\|182381146, gi... - gi\|182381146\|gb\|EDT78625.1\| cobalt ABC transporter, permease protein [Clostridium perfringens NCTC 8... gi\|168211872, gi... - gi\|170710154\|gb\|EDT22336.1\| cobalt ABC transporter, permease protein [Clostridium perfringens B str.... gi\|18311354, gi\|... - gi\|18311354\|ref\|NP_563288.1\| hypothetical protein CPE2372 [Clostridium perfringens str. 13], gi\|1814... gi\|110674822, gi... - gi\|110800175\|ref\|YP_697061.1\| cobalt ABC transporter, permease protein [Clostridium perfringens ATCC...	199.0	[0..1]	[265..1]
gi\|47570253, gi\|... - gi\|47570253\|ref\|ZP_00240904.1\| cobalt transport family protein [Bacillus cereus G9241], gi\|47553077\|...	199.0	[0..2]	[266..1]
gi\|254973764 - gi\|254973764\|ref\|ZP_05270236.1\| ABC transporter, permease protein [Clostridium difficile QCD-66c26] gi\|145956420, gi... - gi\|90576461\|ref\|ZP_01232924.1\| hypothetical protein CdifQ_02000114 [Clostridium difficile QCD-32g58]... gi\|255091154 - gi\|255091154\|ref\|ZP_05320632.1\| ABC transporter, permease protein [Clostridium difficile CIP 107932] gi\|255648662 - gi\|255648662\|ref\|ZP_05395564.1\| ABC transporter, permease protein [Clostridium difficile QCD-37x79] gi\|255099265 - gi\|255099265\|ref\|ZP_05328242.1\| ABC transporter, permease protein [Clostridium difficile QCD-63q42] gi\|255305048 - gi\|255305048\|ref\|ZP_05349220.1\| ABC transporter, permease protein [Clostridium difficile ATCC 43255] gi\|255312808 - gi\|255312808\|ref\|ZP_05354391.1\| ABC transporter, permease protein [Clostridium difficile QCD-76w55] gi\|255515567 - gi\|255515567\|ref\|ZP_05383243.1\| ABC transporter, permease protein [Clostridium difficile QCD-97b34]	199.0	[0..1]	[267..1]
gi\|206743750, gi... - gi\|206978037\|ref\|ZP_03238922.1\| cobalt transport protein [Bacillus cereus H3081.97], gi\|206743750\|gb... gi\|42779222, gi\|... - gi\|42779222\|ref\|NP_976469.1\| cobalt transport protein [Bacillus cereus ATCC 10987], gi\|42735137\|gb\|A... gi\|221237959, gi... - gi\|222093911\|ref\|YP_002527961.1\| ABC transporter, permease; possible cobalt transport protein [Bacil... gi\|217063698, gi... - gi\|217957716\|ref\|YP_002336260.1\| cobalt transport protein [Bacillus cereus AH187], gi\|217063698\|gb\|A...	199.0	[0..2]	[266..1]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKDITIGQY IPGKSFIHKL DPRTKILLSL VYIVNLFLID KFKGYIFITA FTLFIIFISG  60
   61 IKMKYIYKSL KPILLLIIFT GALNIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [87-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPGAAAPLF HWSFIHIYKE GLVLAAFMSI RLIFLIIGTS MLTYTTSPIE LTDGIEKLLT  60
   61 PFSKIGLPAH EFAMMMTIAL RFIPTLIDET DKIMKAQMAR GADIDSGNII KKAKSLIPIL 120
  121 VPLFISSFRR ADELAMAMES RCYRGGEGRT RMKQLKFTSR DCVAVFFSVV LVGVSVLSNY 180
  181 L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.904	N/A	N/A	a.19.1	Fertilization protein
View	Download	0.886	N/A	N/A	f.15.1	Small-conductance potassium channel
View	Download	0.854	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.835	N/A	N/A	a.2.5	Prefoldin
View	Download	0.818	N/A	N/A	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits