YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25328800
Organism:	Clostridium acetobutylicum
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25328800.

Description	E-value	Query Range	Subject Range
gi\|25489859 - pir\|\|E83829 hypothetical protein BH1437 [imported] - Bacillus halodurans (strain C-125) gi\|10174054, gi\|... - gi\|15614000\|ref\|NP_242303.1\| hypothetical protein BH1437 [Bacillus halodurans C-125], gi\|10174054\|db...	139.0	[0..1]	[100..252]
gi\|83574227, gi\|... - gi\|83591313\|ref\|YP_431322.1\| hypothetical protein Moth_2497 [Moorella thermoacetica ATCC 39073], gi\|...	134.0	[0..1]	[99..1]
gi\|7450728 - pir\|\|S74554 hypothetical protein sll0230 - Synechocystis sp. (strain PCC 6803) Y230_SYNY3 - UPF0045 protein sll0230 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0230 PE=3 SV=1 Y230_SYNY3 - UPF0045 protein sll0230 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=sll0230 PE=3 SV...	128.0	[0..2]	[100..23]
gi\|89209933, gi\|... - gi\|89209933\|ref\|ZP_01188327.1\| Protein of unknown function DUF77 [Halothermothrix orenii H 168], gi\|...	128.0	[0..1]	[99..1]
gi\|56963504, gi\|... - gi\|56963504\|ref\|YP_175235.1\| hypothetical protein ABC1739 [Bacillus clausii KSM-K16], gi\|56909747\|db...	128.0	[0..1]	[98..249]
gi\|73662519, gi\|... - gi\|73662519\|ref\|YP_301300.1\| hypothetical protein SSP1210 [Staphylococcus saprophyticus subsp. sapro...	127.0	[0..1]	[99..1]
gi\|242233719, gi... - gi\|242242818\|ref\|ZP_04797263.1\| protein of hypothetical function DUF77 [Staphylococcus epidermidis W... gi\|251805472, gi... - gi\|251810962\|ref\|ZP_04825435.1\| protein of hypothetical function DUF77 [Staphylococcus epidermidis B... gi\|57637729, gi\|... - gi\|57867071\|ref\|YP_188687.1\| hypothetical protein SERP1111 [Staphylococcus epidermidis RP62A], gi\|57... gi\|27315696, gi\|... - gi\|27468150\|ref\|NP_764787.1\| hypothetical protein SE1232 [Staphylococcus epidermidis ATCC 12228], gi...	127.0	[0..1]	[99..1]
DGLA_STAXY - UPF0045 protein in glkA 3'region OS=Staphylococcus xylosus GN=dglA PE=3 SV=1	125.0	[0..1]	[99..1]
gi\|52081015, gi\|... - gi\|52786392\|ref\|YP_092221.1\| YqgV [Bacillus licheniformis ATCC 14580], gi\|52348894\|gb\|AAU41528.1\| Yq...	124.0	[0..1]	[98..1]
gi\|158321379, gi... - gi\|158321379\|ref\|YP_001513886.1\| hypothetical protein Clos_2358 [Alkaliphilus oremlandii OhILAs], gi...	124.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIAQATIIP VGTGSTSLSS YVAACENILK AEKEIKYKLT PMCTIFEGEI DTIIRVIRKM  60
   61 HEIPFENGAE RVITSISIDD RRDKKASMEQ KLNSVREKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.09691
Match:	1lxnA
Description:	Hypothetical protein MTH1187
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits