YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15895386, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15895386, gi|....

Description	E-value	Query Range	Subject Range
gi\|169343410, gi... - gi\|169343410\|ref\|ZP_02864414.1\| MTA/SAH nucleosidase [Clostridium perfringens C str. JGS1495], gi\|16... gi\|18143713, gi\|... - gi\|18309038\|ref\|NP_560972.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Clostridium... gi\|110802685, gi... - gi\|110802685\|ref\|YP_697408.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Clostridiu...	197.0	[0..1]	[230..1]
gi\|110673412, gi... - gi\|110798765\|ref\|YP_694529.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Clostridiu... gi\|168206152, gi... - gi\|170662360\|gb\|EDT15043.1\| MTA/SAH nucleosidase [Clostridium perfringens E str. JGS1987], gi\|168206... gi\|168210533, gi... - gi\|170711422\|gb\|EDT23604.1\| MTA/SAH nucleosidase [Clostridium perfringens B str. ATCC 3626], gi\|1682... gi\|168217768, gi... - gi\|182380221\|gb\|EDT77700.1\| MTA/SAH nucleosidase [Clostridium perfringens NCTC 8239], gi\|168217768\|r...	195.0	[0..1]	[230..1]
MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain CMCP6) GN=mt... MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus GN=mtnN PE=3 SV=1	191.0	[0..1]	[230..1]
MTNN_VIBVY - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain YJ016) GN=mt...	190.0	[0..1]	[230..1]
gi\|126519706, gi... - gi\|229512247\|ref\|ZP_04401726.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|194535206, gi... - gi\|75823413\|ref\|ZP_00752916.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae RC385], gi\|2542235... gi\|116187810, gi... - gi\|75828836\|ref\|ZP_00758172.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae MO10], gi\|25484950... MTNN_VIBC3 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain AT... MTNN_VIBCM - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain M6... gi\|121727503, gi... - gi\|75816484\|ref\|ZP_00746953.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae V52], gi\|121727503... gi\|229355062, gi... - gi\|229507557\|ref\|ZP_04397062.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229519383, gi... - gi\|229519383\|ref\|ZP_04408826.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229521212, gi... - gi\|229521212\|ref\|ZP_04410632.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|90074872 - gi\|90074872\|dbj\|BAE87113.1\| MTA/SAH nucleosidase [Vibrio cholerae bv. albensis] gi\|229524369, gi... - gi\|229524369\|ref\|ZP_04413774.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229332405, gi... - gi\|229528631\|ref\|ZP_04418021.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229607063, gi... - gi\|229607063\|ref\|YP_002877711.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosi... gi\|148875697, gi... - gi\|153828821\|ref\|ZP_01981488.1\| MTA/SAH nucleosidase [Vibrio cholerae 623-39], gi\|148875697\|gb\|EDL73... MTNN_VIBCH - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae GN=mtnN PE=1 SV=1 gi\|121547542, gi... - gi\|121588200\|ref\|ZP_01677944.1\| MTA/SAH nucleosidase [Vibrio cholerae 2740-80], gi\|121547542\|gb\|EAX5... gi\|124114403, gi... - gi\|153216216\|ref\|ZP_01950320.1\| MTA/SAH nucleosidase [Vibrio cholerae 1587], gi\|124114403\|gb\|EAY3322... gi\|124118458, gi... - gi\|153223035\|ref\|ZP_01953610.1\| MTA/SAH nucleosidase [Vibrio cholerae MAK 757], gi\|124118458\|gb\|EAY3... MTNN_VIBCH - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain AT... gi\|153819136, gi... - gi\|153819136\|ref\|ZP_01971803.1\| MTA/SAH nucleosidase [Vibrio cholerae NCTC 8457], gi\|126510326\|gb\|EA...	189.0	[0..1]	[230..1]
gi\|89084479, gi\|... - gi\|89100833\|ref\|ZP_01173685.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Bacillus ...	189.0	[0..1]	[230..1]
gi\|75819925, gi\|... - gi\|75819925\|ref\|ZP_00749986.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae V51], gi\|254226150...	189.0	[0..1]	[230..1]
gi\|46128809 - gi\|46128809\|ref\|ZP_00201937.1\| COG0775: Nucleoside phosphorylase [Haemophilus influenzae R2846]	188.0	[0..1]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIGIIGAMD EELEILLKEM EPQRQEKKAE MIFNLGKLSG KNVVIVRCGI GKVNAAICTQ  60
   61 ILADDFNVDF IINVGVAGGI GKDILPGDIV IANSLVQHDM DTTAFGDRVG QIPRLDTFDF 120
  121 RCSNRLVELA KKVCESFDKQ KAYIGRIATG DQFVADIDKI KWLSSEFDAL ACEMEGGSIA 180
  181 HTAYLNNIPF VVIRSISDNA NNGAHMDYEK FLPIAIKNSS TILKNMISLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1zosA
Description:	No description for 1zosA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits