YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15894963, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15894963, gi|....

Description	E-value	Query Range	Subject Range
gi\|28203202, gi\|... - gi\|28210764\|ref\|NP_781708.1\| caffeoyl-CoA O-methyltransferase [Clostridium tetani E88], gi\|28203202\|...	153.0	[0..1]	[214..1]
gi\|110803308, gi... - gi\|110803308\|ref\|YP_699057.1\| O-methyltransferase family protein [Clostridium perfringens SM101], gi...	151.0	[0..1]	[212..1]
gi\|18145435, gi\|... - gi\|18310754\|ref\|NP_562688.1\| O-methyltransferase family protein [Clostridium perfringens str. 13], g...	151.0	[0..1]	[212..1]
gi\|110798639, gi... - gi\|110798639\|ref\|YP_696458.1\| O-methyltransferase family protein [Clostridium perfringens ATCC 13124... gi\|170660821, gi... - gi\|170660821\|gb\|EDT13504.1\| O-methyltransferase family protein [Clostridium perfringens E str. JGS19... gi\|168211397, gi... - gi\|170710659\|gb\|EDT22841.1\| O-methyltransferase family protein [Clostridium perfringens B str. ATCC ... gi\|168214249, gi... - gi\|170714328\|gb\|EDT26510.1\| O-methyltransferase family protein [Clostridium perfringens CPE str. F49... gi\|182379734, gi... - gi\|182379734\|gb\|EDT77213.1\| O-methyltransferase family protein [Clostridium perfringens NCTC 8239], ... gi\|182625696, gi... - gi\|182625696\|ref\|ZP_02953465.1\| O-methyltransferase family protein [Clostridium perfringens D str. J...	151.0	[0..1]	[212..1]
gi\|77640464, gi\|... - gi\|77683676\|ref\|ZP_00799121.1\| O-methyltransferase, family 3 [Alkaliphilus metalliredigenes QYMF], g...	149.0	[0..1]	[213..1]
gi\|149902461, gi... - gi\|82748268\|ref\|ZP_00910755.1\| probable O-methyltransferase [Clostridium beijerincki NCIMB 8052], gi...	148.0	[0..1]	[212..1]
gi\|255092151 - gi\|255092151\|ref\|ZP_05321629.1\| putative O-methyltransferase [Clostridium difficile CIP 107932] gi\|255313888 - gi\|255313888\|ref\|ZP_05355471.1\| putative O-methyltransferase [Clostridium difficile QCD-76w55] gi\|255516569 - gi\|255516569\|ref\|ZP_05384245.1\| putative O-methyltransferase [Clostridium difficile QCD-97b34] gi\|255649669 - gi\|255649669\|ref\|ZP_05396571.1\| putative O-methyltransferase [Clostridium difficile QCD-37x79] gi\|254974762 - gi\|254974762\|ref\|ZP_05271234.1\| putative O-methyltransferase [Clostridium difficile QCD-66c26] gi\|119636432, gi... - gi\|90575454\|ref\|ZP_01231938.1\| hypothetical protein CdifQ_02001217 [Clostridium difficile QCD-32g58]...	142.0	[0..1]	[214..1]
gi\|115250260, gi... - gi\|126698823\|ref\|YP_001087720.1\| putative O-methyltransferase [Clostridium difficile 630], gi\|115250... gi\|255100242 - gi\|255100242\|ref\|ZP_05329219.1\| putative O-methyltransferase [Clostridium difficile QCD-63q42] gi\|255306131 - gi\|255306131\|ref\|ZP_05350303.1\| putative O-methyltransferase [Clostridium difficile ATCC 43255]	142.0	[0..1]	[214..1]
gi\|158320686, gi... - gi\|158320686\|ref\|YP_001513193.1\| O-methyltransferase family protein [Alkaliphilus oremlandii OhILAs]...	137.0	[0..1]	[212..18]
gi\|88944188, gi\|... - gi\|88944188\|ref\|ZP_01147521.1\| probable O-methyltransferase [Desulfotomaculum reducens MI-1], gi\|889...	131.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKIMYDYIS DYIRNLIPEH EGVLKELEEY AAENNVPIVH KETAKFLEFM MQVKKPLKIL  60
   61 ELGTAIGYSA SLMALNSNAH ITTVDRSDKM IEIALENIKK FGLDDRIEVL NGECIDVIKS 120
  121 LNDKYDVIFI DAGKGHYEDF FNESLRILKD DGIIIADNVL FRGMVASNDL LERRKITIVK 180
  181 RMRRYLDVVS NRPDFTTSVI PMGDGIAVTT RRKSNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	2gpyA
Description:	No description for 2gpyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits