YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25285643
Organism:	Clostridium acetobutylicum
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25285643.

Description	E-value	Query Range	Subject Range
gi\|15894827, gi\|... - gi\|15894827\|ref\|NP_348176.1\| glutathione peroxidase [Clostridium acetobutylicum ATCC 824], gi\|150245... gi\|25285641 - pir\|\|A97091 glutathione peroxidase [imported] - Clostridium acetobutylicum	187.0	[0..1]	[181..1]
gi\|89096887, gi\|... - gi\|89096887\|ref\|ZP_01169778.1\| Glutathione peroxidase [Bacillus sp. NRRL B-14911], gi\|89088267\|gb\|EA...	186.0	[0..1]	[181..1]
gi\|56420320, gi\|... - gi\|56420320\|ref\|YP_147638.1\| glutathione peroxidase [Geobacillus kaustophilus HTA426], gi\|56380162\|d...	184.0	[0..1]	[181..1]
gi\|6939621 - gi\|6939621\|dbj\|BAA90653.1\| Gpx [Paenibacillus polymyxa]	184.0	[0..1]	[181..1]
gi\|91688090, gi\|... - gi\|91784136\|ref\|YP_559342.1\| glutathione peroxidase [Burkholderia xenovorans LB400], gi\|91688090\|gb\|...	180.0	[0..2]	[181..3]
gi\|25285632 - pir\|\|F87463 glutathione peroxidase [imported] - Caulobacter crescentus gi\|13423148, gi\|... - gi\|16125974\|ref\|NP_420538.1\| glutathione peroxidase [Caulobacter crescentus CB15], gi\|13423148\|gb\|AA... gi\|221234741, gi... - gi\|221234741\|ref\|YP_002517177.1\| glutathione peroxidase [Caulobacter crescentus NA1000], gi\|22096391...	179.0	[0..1]	[181..3]
gi\|19705303, gi\|... - gi\|19713270\|gb\|AAL94097.1\| Glutathione peroxidase [Fusobacterium nucleatum subsp. nucleatum ATCC 255...	179.0	[0..1]	[181..17]
gi\|167349148, gi... - gi\|167646718\|ref\|YP_001684381.1\| glutathione peroxidase [Caulobacter sp. K31], gi\|167349148\|gb\|ABZ71...	179.0	[0..1]	[181..1]
gi\|46319251, gi\|... - gi\|67549094\|ref\|ZP_00426968.1\| Glutathione peroxidase [Burkholderia vietnamiensis G4], gi\|67529600\|g...	178.0	[0..2]	[181..3]
gi\|167619571 - gi\|167619571\|ref\|ZP_02388202.1\| glutathione peroxidase [Burkholderia thailandensis Bt4] gi\|83720692, gi\|... - gi\|83720692\|ref\|YP_442535.1\| glutathione peroxidase [Burkholderia thailandensis E264], gi\|83654517\|g...	178.0	[0..2]	[181..3]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIYDFKVKD INGEDISMEE YRGKALLIVN TASKCGFTPQ YEDLEALYKK FKGENFEVLG  60
   61 FPCNQFENQE PGTNNDIKKF CQINYGVTFK IFDKVDVNGE NEAPLYRYLK EQAPFKELDE 120
  121 STPTAKIIAA FLREKLPETL IGDSIKWNFT KFLIDKNGRV VNRFESGVEP MEIESYIKAL 180
  181 I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	2p5qA
Description:	No description for 2p5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits