YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25285641
Organism:	Clostridium acetobutylicum
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25285641.

Description	E-value	Query Range	Subject Range
gi\|56420320, gi\|... - gi\|56420320\|ref\|YP_147638.1\| glutathione peroxidase [Geobacillus kaustophilus HTA426], gi\|56380162\|d...	177.0	[0..1]	[181..1]
gi\|89096887, gi\|... - gi\|89096887\|ref\|ZP_01169778.1\| Glutathione peroxidase [Bacillus sp. NRRL B-14911], gi\|89088267\|gb\|EA...	176.0	[0..1]	[181..1]
gi\|25285643 - pir\|\|G97093 glutathione peroxidase [imported] - Clostridium acetobutylicum gi\|15894849, gi\|... - gi\|15894849\|ref\|NP_348198.1\| glutathione peroxidase [Clostridium acetobutylicum ATCC 824], gi\|150245...	173.0	[0..1]	[181..1]
gi\|6939621 - gi\|6939621\|dbj\|BAA90653.1\| Gpx [Paenibacillus polymyxa]	173.0	[0..1]	[181..1]
gi\|91688090, gi\|... - gi\|91784136\|ref\|YP_559342.1\| glutathione peroxidase [Burkholderia xenovorans LB400], gi\|91688090\|gb\|...	172.0	[0..2]	[181..3]
gi\|19705303, gi\|... - gi\|19713270\|gb\|AAL94097.1\| Glutathione peroxidase [Fusobacterium nucleatum subsp. nucleatum ATCC 255...	171.0	[0..1]	[181..17]
gi\|2982362 - gi\|2982362\|gb\|AAC78466.1\| glutathione peroxidase [Zantedeschia aethiopica]	170.0	[0..2]	[180..86]
gi\|167619571 - gi\|167619571\|ref\|ZP_02388202.1\| glutathione peroxidase [Burkholderia thailandensis Bt4] gi\|83720692, gi\|... - gi\|83720692\|ref\|YP_442535.1\| glutathione peroxidase [Burkholderia thailandensis E264], gi\|83654517\|g...	170.0	[0..2]	[181..3]
gi\|126453862, gi... - gi\|82530879\|ref\|ZP_00890104.1\| COG0386: Glutathione peroxidase [Burkholderia pseudomallei 1106a], gi... gi\|82533914, gi\|... - gi\|82533914\|ref\|ZP_00892965.1\| hypothetical protein Bpse110_02004814 [Burkholderia pseudomallei 1106... gi\|243064336, gi... - gi\|243064336\|gb\|EES46522.1\| glutathione peroxidase [Burkholderia mallei PRL-20], gi\|166999686\|ref\|ZP... gi\|167739190 - gi\|167739190\|ref\|ZP_02411964.1\| glutathione peroxidase [Burkholderia pseudomallei 14] gi\|167846312 - gi\|167846312\|ref\|ZP_02471820.1\| glutathione peroxidase [Burkholderia pseudomallei B7210] gi\|167894893 - gi\|167894893\|ref\|ZP_02482295.1\| glutathione peroxidase [Burkholderia pseudomallei 7894] gi\|167816401 - gi\|167816401\|ref\|ZP_02448081.1\| glutathione peroxidase [Burkholderia pseudomallei 91] gi\|167824781 - gi\|167824781\|ref\|ZP_02456252.1\| glutathione peroxidase [Burkholderia pseudomallei 9] gi\|124385460, gi... - gi\|124385460\|ref\|YP_001029174.1\| glutathione peroxidase [Burkholderia mallei NCTC 10229], gi\|1242934... gi\|217421661, gi... - gi\|217421661\|ref\|ZP_03453165.1\| glutathione peroxidase [Burkholderia pseudomallei 576], gi\|217395403... gi\|167919532 - gi\|167919532\|ref\|ZP_02506623.1\| glutathione peroxidase [Burkholderia pseudomallei BCC215] gi\|53719784, gi\|... - gi\|53719784\|ref\|YP_108770.1\| glutathione peroxidase [Burkholderia pseudomallei K96243], gi\|52210198\|... gi\|160698983, gi... - gi\|254177944\|ref\|ZP_04884599.1\| glutathione peroxidase [Burkholderia mallei ATCC 10399], gi\|19431360... gi\|53723899, gi\|... - gi\|53723899\|ref\|YP_103211.1\| glutathione peroxidase [Burkholderia mallei ATCC 23344], gi\|52427322\|gb... gi\|134277041, gi... - gi\|134277041\|ref\|ZP_01763756.1\| glutathione peroxidase [Burkholderia pseudomallei 305], gi\|134250691... gi\|157936988, gi... - gi\|67753725\|ref\|ZP_00492651.1\| COG0386: Glutathione peroxidase [Burkholderia pseudomallei Pasteur], ... gi\|169653966, gi... - gi\|67763189\|ref\|ZP_00501886.1\| COG0386: Glutathione peroxidase [Burkholderia pseudomallei S13], gi\|2... gi\|126221374, gi... - gi\|67734843\|ref\|ZP_00485917.1\| COG0386: Glutathione peroxidase [Burkholderia pseudomallei 668], gi\|1... gi\|121601353, gi... - gi\|84522398\|ref\|ZP_01009534.1\| COG0386: Glutathione peroxidase [Burkholderia mallei SAVP1], gi\|12160... gi\|76578170, gi\|... - gi\|76808717\|ref\|YP_333991.1\| glutathione peroxidase [Burkholderia pseudomallei 1710b], gi\|76578170\|g... gi\|85067354 - gi\|85067354\|ref\|ZP_01028207.1\| COG0386: Glutathione peroxidase [Burkholderia mallei 10229] gi\|148027215, gi... - gi\|87317191\|ref\|ZP_01098201.1\| COG0386: Glutathione peroxidase [Burkholderia mallei 2002721280], gi\|... gi\|157807470, gi... - gi\|83676139\|ref\|ZP_00937937.1\| COG0386: Glutathione peroxidase [Burkholderia pseudomallei 406e], gi\|... gi\|226198898, gi... - gi\|226198898\|ref\|ZP_03794461.1\| glutathione peroxidase [Burkholderia pseudomallei Pakistan 9], gi\|22... gi\|100918581, gi... - gi\|67638965\|ref\|ZP_00437900.1\| COG0386: Glutathione peroxidase [Burkholderia mallei 10399], gi\|10091... gi\|254200164, gi... - gi\|83617707\|ref\|ZP_00928197.1\| COG0386: Glutathione peroxidase [Burkholderia mallei FMH], gi\|2542001... gi\|194529935, gi... - gi\|83622294\|ref\|ZP_00932621.1\| COG0386: Glutathione peroxidase [Burkholderia mallei JHU], gi\|2542065... gi\|237503990, gi... - gi\|237812825\|ref\|YP_002897276.1\| peroxiredoxin Hyr1 [Burkholderia pseudomallei MSHR346], gi\|23750399... gi\|67673608, gi\|... - gi\|99913092\|ref\|ZP_01319750.1\| hypothetical protein Bpse1_03000649 [Burkholderia pseudomallei 1655],... gi\|254258905, gi... - gi\|90290544\|ref\|ZP_01210198.1\| hypothetical protein Bpse17_02004771 [Burkholderia pseudomallei 1710a... gi\|67639480, gi\|... - gi\|67639480\|ref\|ZP_00438333.1\| peroxiredoxin Hyr1 [Burkholderia mallei GB8 horse 4], gi\|238520027\|gb... gi\|126450623, gi... - gi\|67648275\|ref\|ZP_00446507.1\| COG0386: Glutathione peroxidase [Burkholderia mallei NCTC 10247], gi\|...	169.0	[0..2]	[181..3]
gi\|46319251, gi\|... - gi\|67549094\|ref\|ZP_00426968.1\| Glutathione peroxidase [Burkholderia vietnamiensis G4], gi\|67529600\|g...	169.0	[0..2]	[181..3]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVYDFKAKT IEGKEVSLDT YKGKVLIIAN TASKCGFTPQ YEGLEKLYKE YKDKGLEILG  60
   61 FPSNQFAEQE PGDNNEVKNF CKLNYGVTFQ LFEKTDVRDE NAHPLFNYLT ENAPFKGFDL 120
  121 NHPTGKMLSE VLEKNFPKFL EGNSVKWNFT KFLIDRDGNV VKRFEPTSEP SDMVKDIEKL 180
  181 L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2p5qA
Description:	No description for 2p5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits