YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25498209
Organism:	Clostridium acetobutylicum
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25498209.

Description	E-value	Query Range	Subject Range
gi\|23098182, gi\|... - gi\|23098182\|ref\|NP_691648.1\| hypothetical protein OB0727 [Oceanobacillus iheyensis HTE831], gi\|22776...	165.0	[0..1]	[175..1]
gi\|89097158, gi\|... - gi\|89097158\|ref\|ZP_01170048.1\| Enzyme; dihydrofolate reductase family protein [Bacillus sp. NRRL B-1...	163.0	[0..1]	[176..2]
gi\|229042511, gi... - gi\|229042511\|ref\|ZP_04190256.1\| Enzyme [Bacillus cereus AH676], gi\|228726864\|gb\|EEL78076.1\| Enzyme [... gi\|30018833, gi\|... - gi\|30018833\|ref\|NP_830464.1\| pyrimidine reductase [Bacillus cereus ATCC 14579], gi\|29894375\|gb\|AAP07... gi\|228657403, gi... - gi\|229126081\|ref\|ZP_04255103.1\| Enzyme [Bacillus cereus BDRD-Cer4], gi\|228657403\|gb\|EEL13219.1\| Enzy...	160.0	[0..5]	[176..3]
gi\|47568101, gi\|... - gi\|47568101\|ref\|ZP_00238806.1\| RibD C-terminal domain [Bacillus cereus G9241], gi\|47555255\|gb\|EAL136...	156.0	[0..5]	[176..3]
gi\|89155893, gi\|... - gi\|89206169\|ref\|ZP_01184731.1\| bifunctional deaminase-reductase, C-terminal [Bacillus weihenstephane...	156.0	[0..5]	[176..3]
gi\|51978132, gi\|... - gi\|52144663\|ref\|YP_082166.1\| dihydrofolate reductase family protein [Bacillus cereus E33L], gi\|51978...	155.0	[0..5]	[176..3]
gi\|49331783, gi\|... - gi\|49480227\|ref\|YP_034907.1\| dihydrofolate reductase family protein [Bacillus thuringiensis serovar ...	155.0	[0..5]	[176..3]
gi\|42779795, gi\|... - gi\|42779795\|ref\|NP_977042.1\| dihydrofolate reductase family protein [Bacillus cereus ATCC 10987], gi...	155.0	[0..5]	[176..3]
gi\|172081836, gi... - gi\|177652802\|ref\|ZP_02935175.1\| dihydrofolate reductase family protein [Bacillus anthracis str. A017... gi\|190560345, gi... - gi\|190568551\|ref\|ZP_03021457.1\| dihydrofolate reductase family protein [Bacillus anthracis Tsiankovs... gi\|170667018, gi... - gi\|170689033\|ref\|ZP_02880233.1\| dihydrofolate reductase family protein [Bacillus anthracis str. A046... gi\|170126627, gi... - gi\|170708506\|ref\|ZP_02898948.1\| dihydrofolate reductase family protein [Bacillus anthracis str. A038... gi\|167635134, gi... - gi\|167635134\|ref\|ZP_02393450.1\| dihydrofolate reductase family protein [Bacillus anthracis str. A044... gi\|167511163, gi... - gi\|167640943\|ref\|ZP_02399201.1\| dihydrofolate reductase family protein [Bacillus anthracis str. A019... gi\|49177568, gi\|... - gi\|49183641\|ref\|YP_026893.1\| dihydrofolate reductase family protein [Bacillus anthracis str. Sterne]... gi\|47525928, gi\|... - gi\|47525928\|ref\|YP_017277.1\| dihydrofolate reductase family protein [Bacillus anthracis str. 'Ames A... gi\|165872708, gi... - gi\|165872708\|ref\|ZP_02217337.1\| dihydrofolate reductase family protein [Bacillus anthracis str. A048... gi\|30254252, gi\|... - gi\|30260803\|ref\|NP_843180.1\| dihydrofolate reductase family protein [Bacillus anthracis str. Ames], ... gi\|254684274 - gi\|254684274\|ref\|ZP_05148134.1\| dihydrofolate reductase family protein [Bacillus anthracis str. CNEV... gi\|229602007, gi... - gi\|229602007\|ref\|YP_002865247.1\| dihydrofolate reductase family protein [Bacillus anthracis str. A02... gi\|227003375, gi... - gi\|227816481\|ref\|YP_002816490.1\| dihydrofolate reductase family protein [Bacillus anthracis str. CDC... gi\|254754964 - gi\|254754964\|ref\|ZP_05206998.1\| dihydrofolate reductase family protein [Bacillus anthracis str. Voll... gi\|254742049 - gi\|254742049\|ref\|ZP_05199736.1\| dihydrofolate reductase family protein [Bacillus anthracis str. Krug... gi\|254738739 - gi\|254738739\|ref\|ZP_05196442.1\| dihydrofolate reductase family protein [Bacillus anthracis str. West... gi\|254722078 - gi\|254722078\|ref\|ZP_05183867.1\| dihydrofolate reductase family protein [Bacillus anthracis str. A105... gi\|254762305 - gi\|254762305\|ref\|ZP_05214149.1\| dihydrofolate reductase family protein [Bacillus anthracis str. Aust...	155.0	[0..5]	[176..3]
gi\|65318075 - gi\|65318075\|ref\|ZP_00391034.1\| COG0262: Dihydrofolate reductase [Bacillus anthracis str. A2012]	151.0	[0..5]	[176..9]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNNRKLVLY IATSLDGYIA TEDDSLEWLF KTEGEGDNGY FEFYNTVDTI LIGRRTYDWI  60
   61 IEKEKGKFPY KNKKCYVFSK SEKGKNENVE FINQDVVEFT NKIKRLDGGN IWLVGGGVLL 120
  121 NSFIKERLVD EFIITISPTL IGHGIPLFKK NDFELELKLK GIRRFNQFVE LHYEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	2gd9A
Description:	No description for 2gd9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits