YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25332313
Organism:	Clostridium acetobutylicum
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25332313.

Description	E-value	Query Range	Subject Range
gi\|78043824, gi\|... - gi\|78043824\|ref\|YP_359811.1\| flagellar motor protein MotB [Carboxydothermus hydrogenoformans Z-2901]...	237.0	[0..1]	[254..1]
gi\|20807043 - gi\|20807043\|ref\|NP_622214.1\| Flagellar motor protein [Thermoanaerobacter tengcongensis MB4] gi\|20807043, gi\|... - gi\|20807043\|ref\|NP_622214.1\| flagellar motor protein [Thermoanaerobacter tengcongensis MB4], gi\|2051... gi\|214034455, gi... - gi\|254479612\|ref\|ZP_05092920.1\| OmpA family protein [Carboxydibrachium pacificum DSM 12653], gi\|2234...	227.0	[0..1]	[254..1]
gi\|109646100, gi... - gi\|68205538\|ref\|ZP_00557739.1\| OmpA/MotB domain [Desulfitobacterium hafniense DCB-2], gi\|68170501\|gb...	223.0	[0..1]	[254..1]
gi\|89335227, gi\|... - gi\|89895779\|ref\|YP_519266.1\| hypothetical protein DSY3033 [Desulfitobacterium hafniense Y51], gi\|893...	223.0	[0..1]	[254..1]
gi\|134052981, gi... - gi\|88945346\|ref\|ZP_01148523.1\| Flagellar motor protein [Desulfotomaculum reducens MI-1], gi\|88925021...	222.0	[0..1]	[256..1]
gi\|83572237, gi\|... - gi\|83589323\|ref\|YP_429332.1\| OmpA/MotB [Moorella thermoacetica ATCC 39073], gi\|83572237\|gb\|ABC18789....	221.0	[0..1]	[256..3]
gi\|25332308 - pir\|\|G84054 hypothetical protein BH3239 [imported] - Bacillus halodurans (strain C-125) gi\|15615801, gi\|... - gi\|15615801\|ref\|NP_244105.1\| flagellar motor protein MotS [Bacillus halodurans C-125], gi\|10175862\|d...	220.0	[0..1]	[248..1]
gi\|76797386, gi\|... - gi\|76797386\|ref\|ZP_00779709.1\| OmpA/MotB [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587252\|gb... gi\|241902659, gi... - gi\|241902659\|ref\|ZP_04787391.1\| OmpA/MotB domain protein [Thermoanaerobacter brockii subsp. finnii A... gi\|242258119, gi... - gi\|242258119\|ref\|ZP_04802952.1\| OmpA/MotB domain protein [Thermoanaerobacter sp. X513], gi\|242230369... gi\|114845267, gi... - gi\|167039156\|ref\|YP_001662141.1\| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X514], ...	219.0	[0..1]	[254..1]
gi\|34485061 - gi\|34485061\|gb\|AAB94398.2\| channel protein [Bacillus pseudofirmus] gi\|34485061 - gi\|34485061\|gb\|AAB94398.2\| channel protein [Bacillus pseudofirmus]	217.0	[0..1]	[248..1]
gi\|150016469, gi... - gi\|82747299\|ref\|ZP_00909797.1\| chemotaxis motility protein B, gene motB [Clostridium beijerincki NCI...	216.0	[0..1]	[245..1]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKKHEEPE NSERWLLTYS DLITLLMAFF IVMYASSTVS KEKFAQIAQS LKVGFNGASG  60
   61 KTVIGNQDAV DIKSTSSYVT QEASKQSASA EKAEEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.666	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.599	N/A	N/A	d.50.3	PI-Pfui intein middle domain
View	Download	0.529	N/A	N/A	d.141.1	Ribosomal protein L6
View	Download	0.516	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.495	N/A	N/A	a.156.1	S13-like H2TH domain

Predicted Domain #2

Region A:
Residues: [97-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLKDVKKKID QYVNQNGMQG SVSTNLQEKG LVVSIVDTLM FDTGRAEVKP DFQKKLVEIG  60
   61 EILKTIDNYI RIEGHTDNTP ISNSQYASNI ELGSARSNNV EHLFIDVSKI PVTQMYTVSY 120
  121 ADTRPVADNN SEAGKARNRR VDIVILNSKF NAVEQESSGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits