YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15893597, gi\|...
Organism:	Clostridium acetobutylicum ATCC 824
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15893597, gi|....

Description	E-value	Query Range	Subject Range
gi\|78043824, gi\|... - gi\|78043824\|ref\|YP_359811.1\| flagellar motor protein MotB [Carboxydothermus hydrogenoformans Z-2901]...	237.0	[0..1]	[254..1]
gi\|20807043 - gi\|20807043\|ref\|NP_622214.1\| Flagellar motor protein [Thermoanaerobacter tengcongensis MB4] gi\|20807043, gi\|... - gi\|20807043\|ref\|NP_622214.1\| flagellar motor protein [Thermoanaerobacter tengcongensis MB4], gi\|2051... gi\|214034455, gi... - gi\|254479612\|ref\|ZP_05092920.1\| OmpA family protein [Carboxydibrachium pacificum DSM 12653], gi\|2234...	227.0	[0..1]	[254..1]
gi\|109646100, gi... - gi\|68205538\|ref\|ZP_00557739.1\| OmpA/MotB domain [Desulfitobacterium hafniense DCB-2], gi\|68170501\|gb...	223.0	[0..1]	[254..1]
gi\|89335227, gi\|... - gi\|89895779\|ref\|YP_519266.1\| hypothetical protein DSY3033 [Desulfitobacterium hafniense Y51], gi\|893...	223.0	[0..1]	[254..1]
gi\|134052981, gi... - gi\|88945346\|ref\|ZP_01148523.1\| Flagellar motor protein [Desulfotomaculum reducens MI-1], gi\|88925021...	222.0	[0..1]	[256..1]
gi\|83572237, gi\|... - gi\|83589323\|ref\|YP_429332.1\| OmpA/MotB [Moorella thermoacetica ATCC 39073], gi\|83572237\|gb\|ABC18789....	221.0	[0..1]	[256..3]
gi\|25332308 - pir\|\|G84054 hypothetical protein BH3239 [imported] - Bacillus halodurans (strain C-125) gi\|15615801, gi\|... - gi\|15615801\|ref\|NP_244105.1\| flagellar motor protein MotS [Bacillus halodurans C-125], gi\|10175862\|d...	220.0	[0..1]	[248..1]
gi\|76797386, gi\|... - gi\|76797386\|ref\|ZP_00779709.1\| OmpA/MotB [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587252\|gb... gi\|241902659, gi... - gi\|241902659\|ref\|ZP_04787391.1\| OmpA/MotB domain protein [Thermoanaerobacter brockii subsp. finnii A... gi\|242258119, gi... - gi\|242258119\|ref\|ZP_04802952.1\| OmpA/MotB domain protein [Thermoanaerobacter sp. X513], gi\|242230369... gi\|114845267, gi... - gi\|167039156\|ref\|YP_001662141.1\| OmpA/MotB domain-containing protein [Thermoanaerobacter sp. X514], ...	219.0	[0..1]	[254..1]
gi\|34485061 - gi\|34485061\|gb\|AAB94398.2\| channel protein [Bacillus pseudofirmus] gi\|34485061 - gi\|34485061\|gb\|AAB94398.2\| channel protein [Bacillus pseudofirmus]	217.0	[0..1]	[248..1]
gi\|150016469, gi... - gi\|82747299\|ref\|ZP_00909797.1\| chemotaxis motility protein B, gene motB [Clostridium beijerincki NCI...	216.0	[0..1]	[245..1]

Back

Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKKHEEPE NSERWLLTYS DLITLLMAFF IVMYASSTVS KEKFAQIAQS LKVGFNGASG  60
   61 KTVIGNQDAV DIKSTSSYVT QEASKQSASA EKAEEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLKDVKKKID QYVNQNGMQG SVSTNLQEKG LVVSIVDTLM FDTGRAEVKP DFQKKLVEIG  60
   61 EILKTIDNYI RIEGHTDNTP ISNSQYASNI ELGSARSNNV EHLFIDVSKI PVTQMYTVSY 120
  121 ADTRPVADNN SEAGKARNRR VDIVILNSKF NAVEQESSGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.522879
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits