YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPS1_RHIME
Organism:	Sinorhizobium meliloti 1021
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPS1_RHIME.

Description	E-value	Query Range	Subject Range
gi\|113872897, gi... - gi\|150396335\|ref\|YP_001326802.1\| ATP-dependent Clp protease adaptor protein ClpS [Sinorhizobium medi...	169.0	[0..1]	[117..1]
gi\|218460323 - gi\|218460323\|ref\|ZP_03500414.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli Kim ... gi\|86281629, gi\|... - gi\|86357527\|ref\|YP_469419.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhizobium etli CFN 42]...	167.0	[0..1]	[117..1]
gi\|78695442, gi\|... - gi\|78695442\|ref\|ZP_00859954.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851711...	163.0	[0..3]	[117..9]
gi\|78389018, gi\|... - gi\|90424816\|ref\|YP_533186.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas palus...	162.0	[0..2]	[117..22]
gi\|27380265, gi\|... - gi\|27380265\|ref\|NP_771794.1\| ATP-dependent Clp protease adaptor protein ClpS [Bradyrhizobium japonic...	162.0	[0..7]	[117..20]
gi\|114328313, gi... - gi\|114328313\|ref\|YP_745470.1\| ATP-dependent Clp protease adaptor protein ClpS [Granulibacter bethesd...	160.0	[0..2]	[117..63]
CLPS_RHOS5 - ATP-dependent Clp protease adapter protein ClpS OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH ...	160.0	[0..4]	[117..1]
gi\|126104765, gi... - gi\|126463101\|ref\|YP_001044215.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sphaer... gi\|221160924, gi... - gi\|221640143\|ref\|YP_002526405.1\| ATP-dependent Clp protease adapter protein clpS [Rhodobacter sphaer... gi\|77464259, gi\|... - gi\|77464259\|ref\|YP_353763.1\| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter sphaeroide...	159.0	[0..12]	[117..1]
gi\|68191357, gi\|... - gi\|69277480\|ref\|ZP_00612815.1\| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp. BN...	159.0	[0..1]	[117..18]
gi\|148559927, gi... - gi\|148559927\|ref\|YP_001259088.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella ovis ATCC... gi\|237815589, gi... - gi\|237815589\|ref\|ZP_04594586.1\| ATP-dependent Clp protease adapter protein clpS [Brucella abortus st... gi\|23502048, gi\|... - gi\|23502048\|ref\|NP_698175.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella suis 1330], g... gi\|225627638, gi... - gi\|225627638\|ref\|ZP_03785675.1\| ATP-dependent Clp protease adapter protein clpS [Brucella ceti str. ... gi\|82700008 - gi\|82700008\|ref\|YP_414582.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella melitensis bi... gi\|62290083, gi\|... - gi\|62290083\|ref\|YP_221876.1\| ATP-dependent Clp protease adaptor protein ClpS [Brucella abortus bv. 1... gi\|82616109 - gi\|82616109\|emb\|CAJ11148.1\| Protein of unknown function DUF174 [Brucella melitensis biovar Abortus 2...	159.0	[0..1]	[117..21]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAMPVRMQQ GSEGDGGGPS RGTSVITRTK PKTKKPSLYR VLLLNDDYTP MEFVIHILER  60
   61 FFQKNREEAT VIMLHVHNHG VGECGVFTYE VAETKVTQVM DFARQHQHPL QCVMEKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1mbuC
Description:	Adaptor protein ClpS (YljA)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits