YRC Public Data Repository - Protein Structure Prediction

Protein:	ACPS_RHIME
Organism:	Sinorhizobium meliloti 1021
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACPS_RHIME.

Description	E-value	Query Range	Subject Range
ACPS_SINMW - Holo-[acyl-carrier-protein] synthase OS=Sinorhizobium medicae (strain WSM419) GN=acpS PE=3 SV=1	168.0	[0..1]	[139..1]
ACPS_RHOS4 - Holo-[acyl-carrier-protein] synthase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 82...	165.0	[0..1]	[137..1]
gi\|82541981 - gi\|82541981\|gb\|ABB82020.1\| acyl carrier protein synthase [Sinorhizobium meliloti]	164.0	[0..1]	[139..1]
ACPS_RHOS5 - Holo-[acyl-carrier-protein] synthase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=a...	163.0	[0..1]	[137..1]
ACPS_SILPO - Holo-[acyl-carrier-protein] synthase OS=Silicibacter pomeroyi GN=acpS PE=3 SV=1 ACPS_RUEPO - Holo-[acyl-carrier-protein] synthase OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) G...	162.0	[0..1]	[134..1]
gi\|84391517, gi\|... - gi\|84500564\|ref\|ZP_00998813.1\| 4'-phosphopantetheinyl transferase [Oceanicola batsensis HTCC2597], g...	162.0	[0..1]	[137..1]
gi\|114770104 - gi\|114770104\|ref\|ZP_01447642.1\| 4'-phosphopantetheinyl transferase [alpha proteobacterium HTCC2255] gi\|114770104, gi... - gi\|114770104\|ref\|ZP_01447642.1\| 4'-phosphopantetheinyl transferase [alpha proteobacterium HTCC2255],...	161.0	[0..1]	[133..1]
gi\|25304187, gi\|... - pir\|\|AH2703 holo-(acyl-carrier Protein) synthase [imported] - Agrobacterium tumefaciens (strain C58,... ACPS_AGRFC - Holo-[acyl-carrier-protein] synthase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=acpS PE=3 ...	161.0	[0..1]	[132..1]
ACPS_ROSDO - Holo-[acyl-carrier-protein] synthase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=a...	161.0	[0..1]	[132..1]
gi\|85670432, gi\|... - gi\|85705110\|ref\|ZP_01036210.1\| 4'-phosphopantetheinyl transferase [Roseovarius sp. 217], gi\|85670432...	161.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIGIGSDLI DIRRIENSLQ RFGERFVNRC FTDIEIAKSE GRKNRAASYA KRFAAKEACS  60
   61 KALGTGLAQG VFWKDMGVVN LPGGKPTMQL TGGAAARLQE MLPVGHRAAI HLTITDDFPL 120
  121 AQAFVIIEAL PVAPAEGTV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1f7tA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits