YRC Public Data Repository - Protein Structure Prediction

Protein:	PHF2_RHIME
Organism:	Sinorhizobium meliloti 1021
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHF2_RHIME.

Description	E-value	Query Range	Subject Range
gi\|642655 - gi\|642655\|gb\|AAA74237.1\| unknown [Sinorhizobium meliloti]	113.0	[0..1]	[123..8]
gi\|25522150, gi\|... - pir\|\|AB2689 Na+/H+ antiporter mnhF [imported] - Agrobacterium tumefaciens (strain C58, Dupont), pir... gi\|15155908, gi\|... - gi\|17934822\|ref\|NP_531612.1\| Na+/H+ antiporter [Agrobacterium tumefaciens str. C58], gi\|17739294\|gb\|...	113.0	[0..1]	[123..1]
gi\|150395836, gi... - gi\|150395836\|ref\|YP_001326303.1\| putative monovalent cation/H+ antiporter subunit F [Sinorhizobium m...	109.0	[0..1]	[123..1]
gi\|62425543 - gi\|62425543\|ref\|ZP_00380676.1\| COG2212: Multisubunit Na+/H+ antiporter, MnhF subunit [Brevibacterium...	108.0	[0..6]	[123..5]
gi\|88817757, gi\|... - gi\|88860559\|ref\|ZP_01135197.1\| monovalent cation/proton antiporter, MnhF/PhaF family subunit [Pseudo...	103.0	[0..6]	[94..1]
gi\|119863700, gi... - gi\|119945096\|ref\|YP_942776.1\| monovalent cation/proton antiporter, pH regulation subunit F [Psychrom...	103.0	[0..6]	[94..1]
gi\|114540201, gi... - gi\|114705416\|ref\|ZP_01438324.1\| Na+/H+ antiporter [Fulvimarina pelagi HTCC2506], gi\|114540201\|gb\|EAU...	103.0	[0..6]	[123..9]
gi\|114773101, gi... - gi\|114773101\|ref\|ZP_01450385.1\| monovalent cation/proton antiporter, MnhF/PhaF family subunit [alpha... gi\|114773101 - gi\|114773101\|ref\|ZP_01450385.1\| monovalent cation/proton antiporter, MnhF/PhaF family subunit [alpha... gi\|221135106 - gi\|221135106\|ref\|ZP_03561409.1\| putative monovalent cation/H+ antiporter subunit F [Glaciecola sp. H...	103.0	[0..6]	[94..1]
gi\|91796117, gi\|... - gi\|92113027\|ref\|YP_572955.1\| multiple resistance and pH regulation protein F [Chromohalobacter salex...	103.0	[0..6]	[94..1]
gi\|90336904, gi\|... - gi\|90418824\|ref\|ZP_01226735.1\| putative Na+/H+ antiporter [Aurantimonas sp. SI85-9A1], gi\|90336904\|g... gi\|90336904, gi\|... - gi\|90418824\|ref\|ZP_01226735.1\| putative Na+/H+ antiporter [Aurantimonas sp. SI85-9A1], gi\|90336904\|g...	102.0	[0..6]	[111..10]

Back

Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAAVLSAA SGVALVLLSL ALLLTVLRII RGPTLPDRVL GLDMLVAIAI GLIAVIAVRT  60
   61 GFYLYIDIAI ALGLVGFLAT VAFARFILAR GLSPERRTPG TTEIPQAKPR PSQAGRRKRK 120
  121 GAR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.886057
Match:	PF04066.4
Description:	No description for PF04066.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits