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View Structure Prediction Details

Protein: URE1_BACSU
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 569 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for URE1_BACSU.

Description E-value Query
Range
Subject
Range
gi|86607525 - gi|86607525|ref|YP_476287.1| urease, alpha subunit [Cyanobacteria bacterium Yellowstone B-Prime]
URE1_SYNJB - Urease subunit alpha OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=ureC PE=3 SV=1
619.0 [0..1] [569..3]

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Predicted Domain #1
Region A:
Residues: [1-569]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMSREEYAE LFGPTTGDKI RLGDTDLWIE VEKDFTVYGE EMIFGGGKTI RDGMGQNGRI  60
   61 TGKDGALDLV ITNVVLLDYT GIVKADVGVK DGRIVGVGKS GNPDIMDGVD PHMVIGAGTE 120
  121 VISGEGKILT AGGVDTHIHF ICPQQMEVAL SSGVTTLLGG GTGPATGSKA TTCTSGAWYM 180
  181 ARMLEAAEEF PINVGFLGKG NASDKAPLIE QVEAGAIGLK LHEDWGTTPS AIKTCMEVVD 240
  241 EADIQVAIHT DTINEAGFLE NTLDAIGDRV IHTYHIEGAG GGHAPDIMKL ASYANILPSS 300
  301 TTPTIPYTVN TMDEHLDMMM VCHHLDAKVP EDVAFSHSRI RAATIAAEDI LHDIGAISMT 360
  361 SSDSQAMGRV GEVIIRTWQV ADKMKKQRGA LAGENGNDNV RAKRYIAKYT INPAITHGLS 420
  421 HEVGSVEKGK LADLVLWDPV FFGVKPELVL KGGMIARAQM GDPNASIPTP EPVFMRQMYA 480
  481 SYGKANRSTS ITFMSQASIE RGVAESLGLE KRISPVKNIR KLSKLDMKLN SALPKIEIDP 540
  541 KTYQVFADGE ELSCQPVDYV PLGQRYFLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 165.0
Match: 1s3tC
Description: BORATE INHIBITED BACILLUS PASTEURII UREASE CRYSTAL STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.072432847481 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.36876764173841 bayes_pls_golite062009
urease activity 1.30752895027964 bayes_pls_golite062009
hydrolase activity 0.369982482922775 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides 0.31900467523352 bayes_pls_golite062009

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