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View Structure Prediction Details

Protein: gi|16079444, gi|...
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16079444, gi|....

Description E-value Query
Range
Subject
Range
gi|89099009, gi|... - gi|89099009|ref|ZP_01171888.1| DNA polymerase IV [Bacillus sp. NRRL B-14911], gi|89086139|gb|EAR6526...
385.0 [0..2] [398..6]

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Predicted Domain #1
Region A:
Residues: [1-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGKSRIIFH IDMNSFYASV EMAYDPALRG KPVAVAGNVK ERKGIVVTCS YEARARGVKT  60
   61 TMPVWQAKRH CPELIVLPPN FDRYRNSSRA MFTILREYTD LVEPVSIDEG YMDMTDTPYS 120
  121 SRALETAKEI QSRLQKELLL PSSIGIAPNK FLAKMASDMK KPLGITILRK RQVPDILWPL 180
  181 PVGEMHGVGK KTAEKLKGLG IHTIGELAAA DEHSLKRLLG INGPRLKNKA NGIHHAPVDP 240
  241 ERIYEFKSVG NSSTLSHDSS DEEELLGVFR KLAASVSDRL QRKEVMASKL FIMIRYADWR 300
  301 TITRSTTLRN PIDQKNDILK EAEHLFFKHW KKNPVRLLGI TGTDLVEKEQ AYKQL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.045757
Match: 2asdA
Description: oxoG-modified Insertion Ternary Complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [356-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLFSFNEDAK DEPIQQMMEK LNKKYGTKLI RKGATLKKEE SKTKGTSFNK DFFQDEKKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle