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View Structure Prediction Details

Protein: XLYB_BACSU
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 317 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XLYB_BACSU.

Description E-value Query
Range
Subject
Range
gi|221314843 - gi|221314843|ref|ZP_03596648.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili...
gi|221319764 - gi|221319764|ref|ZP_03601058.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili...
gi|221324043 - gi|221324043|ref|ZP_03605337.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili...
CWLA_BACSU - N-acetylmuramoyl-L-alanine amidase CwlA OS=Bacillus subtilis GN=cwlA PE=1 SV=1
CWLA_BACSU - N-acetylmuramoyl-L-alanine amidase CwlA OS=Bacillus subtilis (strain 168) GN=cwlA PE=1 SV=1
177.0 [0..1] [317..1]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIPVKKNLV SEAKYALKCP NAMSAEYITI HNTANDASAA NEISYMIGNT SSTSFHFAVD  60
   61 DQEVIQGLPL NRNAWHTGDG TNGPGNRKSI GVEICYSKSG GPKYEAAEAL AISFVAQLLK 120
  121 ERGWGIDRVR KHQDWSGKYC PHRILSEGRW DQVKAAIEKE LN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.69897
Match: 1yb0A
Description: Structure of PlyL
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.09849742457731 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [163-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGVSAKKAAV SSSASEYHVK KGDTLSGIAA SHGASVKTLQ SINHITDPNH IKIGQVIKLP  60
   61 QTASASKSHA A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 1d0kA
Description: 36 kDa soluble lytic transglycosylase, SLT35
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [234-317]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSYPLPSGVI KVTSPLTQGT KVKQVQTALA ALYFYPDKGA KNHGVDGVYG PKTANAVKRF  60
   61 QSVSGLTADG IYGPKTKAKM EEKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 1lbuA
Description: HYDROLASE METALLO (ZN) DD-PEPTIDASE
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle