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View Structure Prediction Details

Protein: RL4_BACSU
Organism: Bacillus subtilis subsp. subtilis str. 168
Length: 207 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL4_BACSU.

Description E-value Query
Range
Subject
Range
RL4_GEOSE - 50S ribosomal protein L4 OS=Geobacillus stearothermophilus GN=rplD PE=1 SV=1
284.0 [0..1] [207..1]

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Predicted Domain #1
Region A:
Residues: [1-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKVALYNQN GSTAGDIELN ASVFGIEPNE SVVFDAILMQ RASLRQGTHK VKNRSEVRGG  60
   61 GRKPWRQKGT GRARQGSIRS PQWRGGGVVF GPTPRSYSYK LPKKVRRLAI KSVLSSKVID 120
  121 NNIIVLEDLT LDTAKTKEMA AILKGLSVEK KALIVTADAN EAVALSARNI PGVTVVEANG 180
  181 INVLDVVNHE KLLITKAAVE KVEEVLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.154902
Match: 1p85C
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.46714384821627 bayes_pls_golite062009
structural molecule activity 8.89019844429202 bayes_pls_golite062009
binding 1.20549540301208 bayes_pls_golite062009
protein binding 0.69049990447008 bayes_pls_golite062009
RNA binding 0.514741551458219 bayes_pls_golite062009
nucleic acid binding 0.491336126355036 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle