YRC Public Data Repository - Protein Structure Prediction

Protein:	RIDA_BACSU
Organism:	Bacillus subtilis subsp. subtilis str. 168
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIDA_BACSU.

Description	E-value	Query Range	Subject Range
Y854_PYRHO - UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2 Y854_PYRHO - RutC family protein PH0854 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	186.0	[0..1]	[125..1]
gi\|3257265, gi\|1... - gi\|3257265\|dbj\|BAA29948.1\| 137aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590714\|... gi\|7444996 - gi\|7444996\|pir\|\|B71136 hypothetical protein PH0854 - Pyrococcus horikoshii	186.0	[0..1]	[125..12]
RIDA_PYRFU - 2-iminobutanoate/2-iminopropanoate deaminase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / ...	184.0	[0..1]	[125..1]
Y1251_PYRAB, YC5... - (Q9UZA3) Hypothetical UPF0076 protein PYRAB12510, UPF0076 protein PYRAB12510 OS=Pyrococcus abyssi GN... Y1251_PYRAB - RutC family protein PYRAB12510 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB12510 PE=3 SV=1	175.0	[0..2]	[125..3]
gi\|89211378, gi\|... - gi\|89211378\|ref\|ZP_01189746.1\| YjgF-like protein [Halothermothrix orenii H 168], gi\|89159023\|gb\|EAR7...	173.0	[0..2]	[124..3]
gi\|154174990, gi... - gi\|154174990\|ref\|YP_001409027.1\| putative endoribonuclease L-PSP [Campylobacter curvus 525.92], gi\|1...	173.0	[0..1]	[125..10]
gi\|52346407, gi\|... - gi\|52783905\|ref\|YP_089734.1\| YabJ [Bacillus licheniformis ATCC 14580], gi\|52346407\|gb\|AAU39041.1\| Ya...	173.0	[0..1]	[125..1]
gi\|167037280, gi... - gi\|76795304\|ref\|ZP_00777677.1\| YjgF-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|241883716, gi... - gi\|241903918\|ref\|ZP_04788633.1\| endoribonuclease L-PSP [Thermoanaerobacter brockii subsp. finnii Ako...	172.0	[0..1]	[123..1]
gi\|66796948, gi\|... - gi\|94984338\|ref\|YP_603702.1\| YjgF-like protein protein [Deinococcus geothermalis DSM 11300], gi\|9455...	172.0	[0..1]	[123..11]
gi\|34482639 - gi\|34482639\|emb\|CAE09639.1\| TRANSLATION INITIATION INHIBITOR [Wolinella succinogenes] gi\|34556924 - gi\|34556924\|ref\|NP_906739.1\| translation initiation inhibitor [Wolinella succinogenes DSM 1740]	172.0	[0..3]	[122..2]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKAVHTKHA PAAIGPYSQG IIVNNMFYSS GQIPLTPSGE MVNGDIKEQT HQVFSNLKAV  60
   61 LEEAGASFET VVKATVFIAD MEQFAEVNEV YGQYFDTHKP ARSCVEVARL PKDALVEIEV 120
  121 IALVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1qd9A
Description:	Purine regulatory protein YabJ
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits