YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38048489
Organism:	Drosophila yakuba
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38048489.

Description	E-value	Query Range	Subject Range
COA4 - Protein that localizes to the mitochondrial intermembrane space via the Mia40p-Erv1p system; mutants... COA4_YEAST - Cytochrome oxidase assembly factor 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COA... gi\|190405283 - gi\|190405283\|gb\|EDV08550.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	90.0	[0..1]	[57..75]
SPCC550.01c - CHCH domain protein YJV1_SCHPO - Coiled-coil-helix-coiled-coil-helix domain-containing protein C550.01c OS=Schizosaccharomyces pombe ...	81.0	[0..3]	[52..11]
gi\|44982746, gi\|... - gi\|45187962\|ref\|NP_984185.1\| ADR089Cp [Ashbya gossypii ATCC 10895], gi\|44982746\|gb\|AAS52009.1\| ADR08... gi\|44982746 - gi\|44982746\|gb\|AAS52009.1\| ADR089Cp [Ashbya gossypii ATCC 10895]	81.0	[0..1]	[60..18]
gi\|109462508, gi... - gi\|109462508\|ref\|XP_001067013.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co...	81.0	[0..2]	[60..76]
gi\|189054277, gi... - gi\|7331256\|gb\|AAF60345.1\|AF242180_1 E2IG2 [Homo sapiens], gi\|189054277\|dbj\|BAG36797.1\| unnamed prote...	75.0	[0..2]	[60..26]
gi\|50310587, gi\|... - gi\|50310587\|ref\|XP_455313.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644449\|emb\|CAG9802... gi\|49644449\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	74.0	[0..6]	[57..23]
COA4_MOUSE - Cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Mus musculus GN=COA4 PE=3 SV=1	73.0	[0..2]	[60..17]
gi\|49527410 - gi\|49527410\|emb\|CAG61050.1\| unnamed protein product [Candida glabrata] gi\|50291333, gi\|... - gi\|50291333\|ref\|XP_448099.1\| unnamed protein product [Candida glabrata], gi\|49527410\|emb\|CAG61050.1\|...	71.0	[0..5]	[51..25]
gi\|157118017, gi... - gi\|157118017\|ref\|XP_001658967.1\| hypothetical protein AaeL_AAEL008149 [Aedes aegypti], gi\|108875871\|...	70.0	[0..8]	[61..6]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTDQDPV ELMLKKTGCI ELHYKVQECI AETGDWRACQ EKVKEFRACM QKYVEQQSQK  60
   61 YAHVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.855	a.23.5	Hemolysin expression modulating protein HHA
View	Download	0.855	a.23.5	Hemolysin expression modulating protein HHA
View	Download	0.850	a.2.17	Description not found.
View	Download	0.825	a.2.7	tRNA-binding arm
View	Download	0.825	a.2.7	tRNA-binding arm
View	Download	0.816	a.2.17	Description not found.
View	Download	0.807	f.17.5	Description not found.
View	Download	0.806	a.108.1	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
View	Download	0.805	a.23.5	Hemolysin expression modulating protein HHA
View	Download	0.804	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits