YRC Public Data Repository - Protein Structure Prediction

Protein:	PDCD5_PONPY
Organism:	Pongo pygmaeus
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDCD5_PONPY.

Description	E-value	Query Range	Subject Range
gi\|61370000, gi\|... - gi\|61370000\|gb\|AAX43425.1\| programmed cell death 5 [synthetic construct], gi\|61368717\|gb\|AAX43226.1\|...	142.0	[0..1]	[125..1]
gi\|48145985 - gi\|48145985\|emb\|CAG33215.1\| PDCD5 [Homo sapiens]	142.0	[0..1]	[125..1]
gi\|34856853, gi\|... - ref\|XP_345379.1\| similar to TF-1 apoptosis related protein 19 [Rattus norvegicus], gi\|187281875\|ref\|...	141.0	[0..2]	[125..3]
PDCD5_BOVIN - Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3	139.0	[0..1]	[125..1]
PDCD5_MOUSE - Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3	137.0	[0..1]	[123..1]
gi\|54311185, gi\|... - gi\|54311185\|gb\|AAH84757.1\| LOC495300 protein [Xenopus laevis], gi\|148237996\|ref\|NP_001088436.1\| hypo...	132.0	[0..1]	[125..1]
gi\|73948546 - gi\|73948546\|ref\|XP_533708.2\| PREDICTED: similar to programmed cell death 5 [Canis familiaris]	131.0	[0..15]	[125..28]
gi\|50753780 - gi\|50753780\|ref\|XP_414127.1\| PREDICTED: hypothetical protein [Gallus gallus]	131.0	[0..1]	[125..1]
gi\|62859829 - gi\|62859829\|ref\|NP_001017011.1\| programmed cell death 5 [Xenopus (Silurana) tropicalis]	130.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEELEALR RQRLAELQAK HGDPGDAAQQ EAKHREAEMR NSILAQVLDQ SARARLSNLA  60
   61 LVKPEKTKAV ENYLIQMARY GQLSEKVSEQ GLIEILKKVS QQTEKTTTVK FNRRKVMDSD 120
  121 EDDDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2cruA
Description:	Solution structure of programmed cell death 5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits