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View Structure Prediction Details

Protein: gi|51964396, gi|...
Organism: Oryza sativa Japonica Group
Length: 308 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|51964396, gi|....

Description E-value Query
Range
Subject
Range
gi|46805674, gi|... - gi|50912929|ref|XP_467872.1| putative phi-1 [Oryza sativa (japonica cultivar-group)], gi|46805963|db...
488.0 [0..1] [308..1]
gi|3759184 - gi|3759184|dbj|BAA33810.1| phi-1 [Nicotiana tabacum]
483.0 [0..1] [308..1]
EXOL1_ARATH - Protein EXORDIUM-like 1 OS=Arabidopsis thaliana GN=EXL1 PE=2 SV=1
452.0 [0..1] [307..1]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFRLMIAA VSLSLVQLSM GSRRLMELYI PPASDQLTYH HGSVLSGDIP VSILWYGKFT  60
   61 PTQMSIIADF VVSLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [76-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAPNAATPSV GQWWGTIEQL YLSNAATNSQ TSTRVLLDEQ VSDEQCSLGK SLTLAQIDQL  60
   61 AARVGTKRGG VALVFTDEDV TVEGFC

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [162-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSRCGKHGSD ASAGTTHIWV GNSAKQCPGQ CAWPFAQPVY GPQGTPLVAP NNDVGADGMV  60
   61 MILASMVAGT VTNPYGDGFY QGPQDAPLEA CSACPGVYGS GAYPGNAGKL LVDATTGASY 120
  121 NANGANRRKY LLPALYNPAT SSCDTLV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle