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View Structure Prediction Details

Protein: gi|113624403, gi...
Organism: Oryza sativa Japonica Group
Length: 305 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113624403, gi....

Description E-value Query
Range
Subject
Range
BBR_ARATH - E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana GN=BBR PE=2 SV=1
149.0 [0..31] [305..78]

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Predicted Domain #1
Region A:
Residues: [1-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAAKDTTAA AADQNPTPNP PTAAAPPDDS AAAAAAGRRP FTSLTQEEAD LALARVLQEQ  60
   61 ERAYMMLSAH HGGDYAASDG GSYEFDEEGE GSDFEDEDGD GDGDGEALDE DEEVADADAD 120
  121 AAGDPAELDP ARYEDDEAFA RALQDAEERE VAGRLMALAG LSDWRVMDHD DDDVDDDDDE 180
  181 DDDDDDDDED EDGDDPQDAW EDVDPDEYSY EELVALGEVV GTE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [224-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRGLSADTLA SLPSITYRAQ DKQDGNMEQC VICRVEFEEG ESLVALPCKH SYHSECINQW  60
   61 LQLNKVCPMC SAEVPTSQDT RA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.045757
Match: 1x4jA
Description: Solution structure of RING finger in RING finger protein 38
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle