| Protein: | gi|50947025, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 728 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50947025, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
1301.0 | [0..1] | [695..1] |
|
Region A: Residues: [1-173] |
1 11 21 31 41 51
| | | | | |
1 METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP 60
61 AAAAAAAAAS ASAAAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSLIENPS FPQTQTLARS 120
121 PSPDPDQLTT NSRGVSVDLV SLSRLADPYD AELGKRTARM TTEEELMGFI SSL
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [174-280] |
1 11 21 31 41 51
| | | | | |
1 AGQWVNQRMR RKLVDASFFG DHLPSGWRLQ LGIERKDRKA WVNCFSYVSP KGQSFATCQE 60
61 VSAYLMSLLG YPEFKTDNIE YGSTQQHGLC ADDGVNVLGV QHQIGTS
|
| Detection Method: | |
| Confidence: | 1.5 |
| Match: | 1d9nA |
| Description: | Methylation-dependent transcriptional repressor MBD1/PCM1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.236830846471166 | bayes_pls_golite062009 |
|
Region A: Residues: [281-476] |
1 11 21 31 41 51
| | | | | |
1 MDSQSNLPVA SATFYSHSRD QDETVADDIN SYECQQCNLT FHGQSAYAHH LITFHKVSSK 60
61 RRKSNKVSKF GEPVIGKDGK FECPVCNKTF EEQSRYFGHI GSHAKYQGLT PEAFLQTFSG 120
121 KVGNNSFAGL SSSLQVLVGS PQLNEKTTAC EARSQHHDCS TKHGGNSTRG IDLFNSNHPA 180
181 NFNGHNQSWC RSDEIP
|
| Detection Method: | |
| Confidence: | 1.41 |
| Match: | 2ghfA |
| Description: | No description for 2ghfA was found. |
| Term | Confidence | Notes |
| binding | 0.304205134456748 | bayes_pls_golite062009 |
|
Region A: Residues: [477-664] |
1 11 21 31 41 51
| | | | | |
1 PTTEAQSTWT YRNNEMNCAD RTVPRTVPQP NDHEDCRVSG FAEATNFNDQ AGRHQGFRPF 60
61 SFGTTNHCQG QIIDHAVAAS KHAEVNNSMK SRDVNLNSRL NTISFPIATA NNETSTALND 120
121 VNRSCITGKG FSGSFSNNDG AASIVLPSSG LNNKISSSLG VADRSSIAAR SFNAGYVYEN 180
181 GASEANNI
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [665-728] |
1 11 21 31 41 51
| | | | | |
1 GNKNNTMVYQ TSLAMRPLSP GKQSSGVASR RTAAVVSERH GGQVVRHPRT ASSVYMPEQG 60
61 PGWL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
