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View Structure Prediction Details

Protein: gi|125589854, gi...
Organism: Oryza sativa Japonica Group
Length: 145 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125589854, gi....

Description E-value Query
Range
Subject
Range
gi|38347665, gi|... - gi|50922941|ref|XP_471831.1| OSJNBa0041M06.7 [Oryza sativa (japonica cultivar-group)], gi|38347665|e...
gi|125561484 - gi|125561484|gb|EAZ06932.1| hypothetical protein OsI_028164 [Oryza sativa (indica cultivar-group)]
223.0 [0..1] [145..1]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSSVFRRG NVKELISNVS VYTSAAESSG GLSLIFKRWA TKKTAGSTKN GRDSNPKYLG  60
   61 VKKFGGEKVE PGNIIIRQRG TRFHPGNYVG MGKDHTLFCL KEGHVRFERN KLTGRKWVHV 120
  121 DPVAGHVLHP VYASDSTPAA EMEPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.221849
Match: 1vs6W
Description: No description for 1vs6W was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.93798084434094 bayes_pls_golite062009
structural molecule activity 9.3625249805433 bayes_pls_golite062009
peptidyltransferase activity 3.94173449567504 bayes_pls_golite062009
transferase activity, transferring amino-acyl groups 0.479709297593055 bayes_pls_golite062009
catalytic activity 0.161830442565647 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle