YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50942951, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50942951, gi|....

Description	E-value	Query Range	Subject Range
ATP5E_ARATH - ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3	99.0	[0..3]	[66..2]
gi\|115475555, gi... - gi\|115475555\|ref\|NP_001061374.1\| Os08g0250200 [Oryza sativa (japonica cultivar-group)], gi\|113623343...	99.0	[0..1]	[68..1]
ATP5E_IPOBA - ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2	98.0	[0..3]	[66..2]
ATP5E_MAIZE - ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1	97.0	[0..1]	[66..1]
gi\|55243554, gi\|... - gi\|58380900\|ref\|XP_310858.2\| ENSANGP00000012584 [Anopheles gambiae str. PEST], gi\|55243554\|gb\|EAA067...	97.0	[0..5]	[61..27]
gi\|21068676 - gi\|21068676\|emb\|CAD31844.1\| putative epsilon subunit of mitochondrial F1-ATPase [Cicer arietinum]	95.0	[0..3]	[66..2]
gi\|157104383, gi... - gi\|157104383\|ref\|XP_001648383.1\| hypothetical protein AaeL_AAEL004060 [Aedes aegypti], gi\|108880367\|...	89.0	[0..8]	[63..1]
gi\|187175309, gi... - gi\|89473714\|gb\|ABD72669.1\| unknown [Acyrthosiphon pisum], gi\|187175309\|ref\|NP_001119671.1\| stunted-l...	88.0	[0..8]	[63..1]
gi\|25044815 - gi\|25044815\|gb\|AAM28278.1\| ATP synthase epsilon subunit [Ananas comosus]	88.0	[0..9]	[66..15]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATTAAVPF WRAAGMTYIG YSNVCAALVR RCLKEPHKSE AASREKVHFA ISKWADGKQE  60
   61 KPNLGSVESR KDGRSKGNLD VGIGGLYTIE SSWYTLIPLE DCTI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits