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View Structure Prediction Details

Protein: gi|5688945, gi|2...
Organism: Oryza sativa Japonica Group
Length: 350 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5688945, gi|2....

Description E-value Query
Range
Subject
Range
gi|238013616, gi... - gi|4803710|emb|CAB42658.1| iron sulfur subunit of succinate dehydrogenase (truncated) and ribosomal ...
353.0 [0..3] [350..2]

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Predicted Domain #1
Region A:
Residues: [1-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAALLRRS PAARALLSPA LSSRLVASKP HSSSPAPPPP PSKAGANTKT FSIYRWDPDS  60
   61 PSTKPHLKDY KVDLSDCGPM VLDVLLKIKN EQDPSLTFRR SCREGICGSC AMNIDGDNGL 120
  121 ACLTKISSAS SASTISPLPH MFVIKDLVVD MTNFYNQYKS VEPWLKRKDA PPQPGKEIPQ 180
  181 TKADRAKLDG MYECILCACC STSCPSYWWN PEEYLGPAAL LHANRLPLLG TLIKPKPNMF 240
  241 MHIQARGYHG VSEKRNLLDH KRRLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.69897
Match: 1zoyB
Description: Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [266-350]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAKYELKGKL YKAVCRDPDL PADMQDQFRY KLSKLPRNSS MTRLRNRCIF TGRSRAVYKK  60
   61 FRMSRIVFRS LANKGELLGV KKASW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.30103
Match: 1vs5N
Description: No description for 1vs5N was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle