| Protein: | gi|49328085, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 1178 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
No multiple sequence alignment data found for gi|49328085, gi|....
|
Region A: Residues: [1-231] |
1 11 21 31 41 51
| | | | | |
1 MTGNENAVAT NQGDSMSKNP PAEAENGAST TSELEKDSNA AKPCRSDMNR EPTKMTSEAT 60
61 RSWCPIHKTR KHTLQACWVF LNVRAEIRAC KERGIQRISP TRDVYCPIHK TKNHDLSSCK 120
121 VFSSAMEAPS PKVQQAHIPI RDKDKERGAM PTSDRFVGVI NIDPHELSVL HLLEDYGSST 180
181 TSAPREVLAI DDVGISACTN AETENQLTTP AQHIRAVNAI MRETPYGTYK R
|
| Detection Method: |  |
| Confidence: | 32.30103 |
| Match: | 1l6nA |
| Description: | HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA); HIV-1 capsid protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [232-354] |
1 11 21 31 41 51
| | | | | |
1 HAIEDDLHAL TQNPGESLRK YIRRFNECRN TILEITDAFV IRAFKSGVRD RYTTQELATR 60
61 RITTTRRLFE IVERCAHADD ALRRKNDKPK TEGEKKPATD APESSKKKNR KNGKRKAQAE 120
121 VLA
|
| Detection Method: | |
| Confidence: | 37.69897 |
| Match: | 3dikA |
| Description: | No description for 3dikA was found. |
|
Region A: Residues: [355-481] |
1 11 21 31 41 51
| | | | | |
1 AEYANPPKRP DPQSSNTKKA WCPIHKTNRH SLEDCLVFKK SLEKHIASEK GKRGAAPKMK 60
61 WSEQKIEFSE EDHPKTAVIP GRYPIVVEPT IRNIKVARVL IDGGSSINLL FASTLDAMGI 120
121 PQSKLTP
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1aafA |
| Description: | NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [482-602] |
1 11 21 31 41 51
| | | | | |
1 TDQPFHGITP QSSSRPLGKI TLPVTFGQAN NFRTEQITFD VAEFDTAYNA IIGRTALAKF 60
61 MAASHYAYQV LKMPGPKRII TIQGNAKLEV QCDKRSLDMV KQTPSPPATT EPPKKPSDMP 120
121 G
|
| Detection Method: | |
| Confidence: | 26.39794 |
| Match: | 1hvcA |
| Description: | CRYSTAL STRUCTURE OF A TETHERED DIMER OF HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [603-1178] |
1 11 21 31 41 51
| | | | | |
1 VPREVIEHKL MVQPDAKPVK QRLRRFAPDR KQAIREVLHP EWLANPVMVR KANGKWRMYV 60
61 DFTDLNKACP KDHFPLPRID QLVDSIAVCE LLSFLDAYSG YYQISMAKED EEKTSFIMPF 120
121 GVFCYVKMPF GLITAGNTFQ RTVQGALSDQ LGNNVEAYVD DIVVKTKTCD SLIDDLWETF 180
181 DNLRRYRLML NPEKCTFGVP SGKLLGFLVS GRGIEANPEK IKAIENMKSP TRLKEVQKLT 240
241 GCMAALSRKP KRHSLHSSAT YQPPVLVAPQ PNEELFLYIA ATPYSVSTII VVEREKVQRP 300
301 IYYISEALHD AKTRYPQIQK LIYAVIMTSR KLRHYFQAHR VTVVSSFPLG EVVRNKDVVG 360
361 RIAKWVFELS QFDVHFAPRT AIKSQVLADF VADWTMPDNK SDNQVDNETW TMAFDGALNS 420
421 QGAGAGFILM SPSGDQFKHA IHLNFRATNN TAEYEGLLAG IRAAAALGVK RLIVKGDSEL 480
481 VANQVHKDYK CSNPELSKYL AEVRKLEKRF DGIEVRHVYR KDNIEPDDLA RRASRREPLK 540
541 PGTFLDILTK PSVKEVSGEV SPDTLSRPRK IDFPEC
|
| Detection Method: | |
| Confidence: | 170.0 |
| Match: | 3di6A |
| Description: | No description for 3di6A was found. |
