YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|115460534, gi...
Organism: Oryza sativa Japonica Group
Length: 533 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115460534, gi....

Description E-value Query
Range
Subject
Range
LCAT4_ARATH - Lecithin-cholesterol acyltransferase-like 4 OS=Arabidopsis thaliana GN=LCAT4 PE=1 SV=1
490.0 [0..3] [533..4]

Back

Predicted Domain #1
Region A:
Residues: [1-430]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLEDLIRA IELWLRIAKE QVPLVDPTLD PVLLVPGIGG SILEAVDEAG KKERVWVRIL  60
   61 AADHEFRAHL WSKFDASTGK TVSVDEKTNI VVPEDRYGLY AIDTLDPDMI IGDDSVCYYH 120
  121 DMIVQMIKWG YQEGKTLFGF GYDFRQSNRL SETLDRFSRK LESVYIASGE KKINLITHSM 180
  181 GGLLVKCFMS LHSDVFEKYI KSWIAIAAPF QGAPGYITTS LLNGMSFVEG WESRFFISKW 240
  241 SMQQLLLECP SIYELLANST FQWEDTPYLQ IWRQKLDTNG KKSAMLESYE PDEAIKMIRE 300
  301 ALSKHEIISD GMHIPLPLDM DILRWAKETQ DVLCNAKLPK SVKFYNIYGT DYDTAHTVRY 360
  361 GSEHHPISNL SDLLYTQGNY ICVDGDGSVP VESAKADGLD AVARVGVAAD HRGIVCDRHV 420
  421 FRIIQHWLHA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 2hihA
Description: No description for 2hihA was found.

Predicted Domain #2
Region A:
Residues: [431-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEPDPFYDPL NDYVILPTAF EIEKYHEKHG DITSVREDWE IISHRDDESK RPAELPPMFN  60
   61 TLSASREGED GSLEEAQATI FVHPESKGRQ HVEVRAVGVT HDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle