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View Structure Prediction Details

Protein: gi|34897354, gi|...
Organism: Oryza sativa Japonica Group
Length: 758 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34897354, gi|....

Description E-value Query
Range
Subject
Range
gi|108707573 - gi|108707573|gb|ABF95368.1| expressed protein [Oryza sativa (japonica cultivar-group)]
487.0 [0..1] [758..1]

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Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQISLEHRY KECRPRRNNS CPTKTLVGKD QLKELEHRRP SPSVIAKLMG LDVLPPAYVA  60
   61 HNQHQEFKDV FEVSEEPQEA VTKERSHNFP KGLPSLKRSA LKLRKLMPSK SPYGDETFDN 120
  121 NVVNQDGFDR LNSLEINNPL FE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [143-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHPYDVNCSP NYRYEKDSTS STFRKYPVGL GNSSLKEIVV LELGLGEVQH SGNAFSTPEP  60
   61 SDVNKNFRRK MKQAEFSTTN RGSQNLLGTK DINVPRIKGE RHLTSNAVDS LLKRQDSSLD 120
  121 QYNTVDTDNT GSSQKCVSSE VNSRKSNRSS SNSSPWKIRR KYEEGAIGSK TLAEMFALSD 180
  181 SERLKRDSDS HVQIQDNKLN RGNNNDKEGC FIVLPKHAPR LPPHSLLDKN SSCERSPHDI 240
  241 FFSNTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [389-584]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISHNSGQFHF DSFWDKPTRQ QISSPTQDDL RNASCARYHT LEQHRSSFPS YDNTRNNSWH  60
   61 LTDDFSTFAC INEKVLFTTD EDLLRKPTET VHSSFGSRLS GEQKVSASPF HCGVYEAITI 120
  121 SDHTCAAKSR RSLKEVDRPS PVSILEPPTD EDSCCSGYLK NDSQVMPSID KQIYGCELRY 180
  181 EQEVSLSSDN DNDSSD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [585-758]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSLEAFEVEE EKEFSYLLDI LISSGVIVAD SQLLFKSWQS SGYLVGPHVF DKLEGKYSKV  60
   61 ATWPRPQRRL LFDLANSVLS EILAPCIDTH PWAKLSRNCC PVWGPEGPVE VVWQTMVRQQ 120
  121 EELAVAHPDD KILDPEWLEF GEGINMVGWH IARMLHGDLL DDVILEFLSG FVAS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle