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View Structure Prediction Details

Protein: gi|50919395, gi|...
Organism: Oryza sativa Japonica Group
Length: 348 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50919395, gi|....

Description E-value Query
Range
Subject
Range
gi|113550159, gi... - gi|115456175|ref|NP_001051688.1| Os03g0816000 [Oryza sativa (japonica cultivar-group)], gi|113550159...
327.0 [0..1] [250..1]
PUB62_ARATH - U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1
299.0 [0..131] [348..150]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPPPGAHR AASSSGALAP AAFPAASHFA SRAAAPFLRQ QPHPGGGGDS DGDNAVEEVD  60
   61 EGDDDEDDEE EEAELADGAP CSSQQRCAST PGIGRAGMNR GNGMRQIEEE QQWQHSHIYN 120
  121 CGNEQYGHAS SREDEPSTIP REMRVENGYG VIG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [154-258]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RREGGPASSY WDLLRAHLSD PLTGILMDDA MILSCGHSYG SNGMQHIYRM KACGKCGQPI  60
   61 TEDSIRPNLA LRLAVQAFKR EEESAKSLKR RRERLEQDKC GNDEP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.075721
Match: PF04564.7
Description: No description for PF04564.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [259-348]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPTEISRGKG VQFPFAVFDR VIIKGNKRTP ERFVGRVAVV TAQCLNGWYV VKTLDNAESV  60
   61 KLQYRSLAKF TDGGQSSAMV ANNAQNANWL 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle