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View Structure Prediction Details

Protein: gi|27452914, gi|...
Organism: Oryza sativa Japonica Group
Length: 193 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27452914, gi|....

Description E-value Query
Range
Subject
Range
gi|124876188, gi... - gi|84353154|ref|ZP_00978091.1| COG2217: Cation transport ATPase [Burkholderia cenocepacia PC184], gi...
146.0 [0..7] [179..110]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVSSALSS FLYCCFSPTG GHRHGHRAGA YYYSSHPTST NTYYYEGGLA GRRMGRSRPL  60
   61 SLQTVELKVR MCCSGCERVV KHALMKLRGV DSVEVELEME KVTVTGYVER QRVLKEVRRA 120
  121 GKKAEFWPNP DLPLYFTSAK DYFHDEESFR PSYNYYRHGY NGDKHGHLPE PHRGADPVSN 180
  181 LFNDDDVNAC SIM

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Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 1p6tA
Description: Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.246147507070597 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle