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View Structure Prediction Details

Protein: gi|20372917
Organism: Oryza sativa
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20372917.

Description E-value Query
Range
Subject
Range
MGAT1_RAT - Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Rattus norvegicus GN=Mgat1...
447.0 [0..9] [441..14]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSPCDLRI LLVAAAAAFI YIQVRLFSTQ SHYADRLAQA EKSENQCTSQ LRSLIDQVSS  60
   61 QQEKIVALEE MKIRQDEERV HLKILIQDLE KRSVQTLVNN NVA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVAAVVVMAC NRPDYLQRTV ESILKYQTSV ASKFPLFISQ DGINGEVKKK ALSYNEITYM  60
   61 QHLDLEPVRT ERPGELIAYY KIAKHYKWAL DELFIKHNFA RVIILEDDME IAPDFFDYFE 120
  121 AAAKLLDNDK TIMAVSSWND NGQKQFVYDP KALYRSDFFP GLGWMLTKPT WIELSPKWPK 180
  181 AYWDDWVRLK EVHRDRQFIR PEVCRTYNFG EHGSSMGQFF RQYLEPIKLN DAHIKWNSED 240
  241 LSYLKEDKFL IQFGKDVASA TPLHGSDAAL KAHNMDADVR IQYNDQEDFE RIARQFGIFE 300
  301 EWKDGIPRTA YKGVVVFRYK SSRRRIYLVG PDSLSQLRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.522879
Match: 1fo8A
Description: N-acetylglucosaminyltransferase I
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.3567084433464 bayes_pls_golite062009
transferase activity 1.04375515050786 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle