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View Structure Prediction Details

Protein: gi|50916172, gi|...
Organism: Oryza sativa Japonica Group
Length: 378 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50916172, gi|....

Description E-value Query
Range
Subject
Range
gi|190906586, gi... - gi|75239532|ref|ZP_00723502.1| COG0083: Homoserine kinase [Escherichia coli F11], gi|191173201|ref|Z...
KHSE_ECOL5 - Homoserine kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=thrB PE=3 SV=1
242.0 [0..51] [374..1]

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Predicted Domain #1
Region A:
Residues: [1-378]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAAAAAA PSPAPCFPST RHTLPGLVSV RVSRRVKVAV AIADPAPAFN SVTAFAPATV  60
   61 ANLGPGFDFL GCAVADASLS LGDTVTATLD PSLPPGTVAI ASVTSPSRPT LADRLSRDPL 120
  121 RNCAGVAAIA ALRALDVKSH AVSIHLTKGL PLGSGLGSSA ASAAAAAKAV DALFGSLLHQ 180
  181 DDLVLAGLES EKAVSGFHAD NIAPAILGGF VLVRSYDPFH LIPLSSPPAL RLHFVLVTPD 240
  241 FEAPTSKMRA ALPKQVAVHQ HVRNSSQAAA LVAAVLQGDA TLIGSAMSSD GIVEPTRAPL 300
  301 IPGMAAVKAA ALEAGALGCT ISGAGPTAVA VIDGEEKGEE VGRRMVEAFA NAGNLKATAT 360
  361 VAQLDRVGAR VISTSTLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 1fwkA
Description: Homoserine kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
homoserine kinase activity 2.13523123963453 bayes_pls_golite062009
catalytic activity 1.20658247466773 bayes_pls_golite062009
amino acid kinase activity 0.292543190343241 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle