YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|48716358, gi|...
Organism: Oryza sativa Japonica Group
Length: 213 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48716358, gi|....

Description E-value Query
Range
Subject
Range
gi|215697434, gi... - gi|51964534|ref|XP_507052.1| PREDICTED OJ1202_E07.21-2 gene product [Oryza sativa (japonica cultivar...
294.0 [0..1] [212..1]

Back

Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMCEKDQNF HWGYDLFRDP FAPIGYYGPP HGYGDGNYCD LHYARDASHL DETHLHSSAL  60
   61 TYDLYNPSVG IYHPGNAGEH DHDTVYIEPT SSNSCPDTDD SFPMDEEVGK RFYPMVPVPH 120
  121 VPKINGEIPS VDEATMDHER LTERLRLYEL VEHKVKGDGN CQFRALSDQL YQSPDHHEFV 180
  181 RQQIMSQLKS NRDAYDGYVP MAYDDYLEKV SHA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.45
Match: 1tffA
Description: Structure of Otubain-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.465394995609075 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle