YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46805323, gi\|...
Organism:	Oryza sativa Japonica Group
Length:	975 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46805323, gi|....

Description	E-value	Query Range	Subject Range
ESP1_ARATH - Separase OS=Arabidopsis thaliana GN=ESP1 PE=2 SV=1	762.0	[0..93]	[975..1282]
gi\|115400059, gi... - gi\|115400059\|ref\|XP_001215618.1\| separin [Aspergillus terreus NIH2624], gi\|114191284\|gb\|EAU32984.1\| ...	521.0	[0..289]	[972..1456]
gi\|66851304, gi\|... - gi\|70997872\|ref\|XP_753668.1\| separin [Aspergillus fumigatus Af293], gi\|66851304\|gb\|EAL91630.1\| separ...	518.0	[0..289]	[972..1453]
gi\|67903592, gi\|... - gi\|67903592\|ref\|XP_682052.1\| BIMB_EMENI CELL DIVISION-ASSOCIATED PROTEIN BIMB [Aspergillus nidulans ...	506.0	[0..335]	[974..1462]
BIMB_EMENI - Separin OS=Emericella nidulans GN=bimB PE=3 SV=1	506.0	[0..335]	[974..1478]
gi\|83765215 - gi\|83765215\|dbj\|BAE55358.1\| unnamed protein product [Aspergillus oryzae] gi\|169765778 - gi\|169765778\|ref\|XP_001817360.1\| hypothetical protein [Aspergillus oryzae RIB40]	503.0	[0..289]	[972..1445]
gi\|49642866\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|49642866, gi\|... - gi\|50307505\|ref\|XP_453732.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642866\|emb\|CAH0082...	497.0	[0..252]	[975..913]
gi\|38110580, gi\|... - gi\|39976685\|ref\|XP_369730.1\| hypothetical protein MG06245.4 [Magnaporthe grisea 70-15], gb\|EAA56274....	496.0	[0..241]	[973..1381]
gi\|42551791, gi\|... - gi\|46122253\|ref\|XP_385680.1\| hypothetical protein FG05504.1 [Gibberella zeae PH-1], gi\|42551791\|gb\|E...	489.0	[0..226]	[975..1352]
gi\|90304057, gi\|... - gi\|90304057\|gb\|EAS33688.1\| hypothetical protein CIMG_04712 [Coccidioides immitis RS], gi\|119189329\|r...	479.0	[0..334]	[973..1520]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQSALDKLN GTKLESPVDS YDKLKTTCII CSKYGKEPLA ANDGVLPSCT VCANFSQASG  60
   61 DHSNEFTALK FLKHKDSECC PPLDVKVKRT TRNSSRLAKE QNVEAHVKTR TRSSKRTAHM 120
  121 KGEKASTELH CKNGLSCSDN LSTDTLVRGK ANCILDGVDQ SIDYTCSIFG CWNCLFVNTL 180
  181 NSGSIQNILQ FRWDCVWHHN HVSILLKIAK ALGAHGGLHG AHKIHNIYWQ CISLLYFRS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [240-479]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPQDCYRTYE HNLFGLIMDQ STGDFLISER AEILYSMSLF LLKGFLSEQS RDICCRFCSV  60
   61 QMSDVVPWLL KAFVLSRENP SLFQEVCRLL ACIFLLATID STAQLPLYSS GSLSLNHWAA 120
  121 YFHQNSVGTY LDCQYFAGLK SLLRKNDSKA ALEDFSNASD ESLSKFFRFS SADIGHLEIH 180
  181 IKEFFHKLPD VPIVCISMLE GDFVNVLGEI LLLPSYFPAW MMLSRFDSTN KPITMLLPVD 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [480-619]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AISKETQHED SCTKELDNLM RATDKNWQCP WGYTIIDYVA PTFRKILEEN FISLSSATLT  60
   61 LNDGQANHVK WWSHRMKLNN HLDKMLKDME ESWLGPWKCL LLGYDLTDQH IEEALTNLIA 120
  121 GLESEFKFEV NPVLIKVILG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [620-804]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAMSVDEVQD CVSQLISYKG YFGRGGCCGK DRLRALSSCC IESEALETVE CLIKSTVNEL  60
   61 IEPVDRDPVI FVLDTNVQML PWENLPALRN QEIYRMPSIG SVFLALTRSN NYWKDARVIA 120
  121 PPFPVIDPFN AFYLLNPSGD LSSTQEEFDQ MFKNYEWKGK AGYAPTAEEL VLALRNHDLF 180
  181 LYFGH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [805-916]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGTQYVSGK EIEKLDNCAA ALLMGCSSGT LRCKGCYAPQ GAPLSYLSAG SPAVIANLWD  60
   61 VSDKDIDRFS KALLGSWLQE NFVAAKNCSK CCQLTREFES MTIAVEGNGR PR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [917-975]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRGTRGKKSE RMNNCSKRCT CGNRRVASYL SEARRACRLP LMIGGSPVCY GVPTIIRKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits