YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|50913119, gi|...
Organism: Oryza sativa Japonica Group
Length: 482 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50913119, gi|....

Description E-value Query
Range
Subject
Range
gi|42564151 - gi|42564151|ref|NP_566484.2| lipase class 3 family protein [Arabidopsis thaliana]
450.0 [0..10] [477..8]
gi|51090505, gi|... - gi|51090505|dbj|BAD35707.1| lipase class 3-like [Oryza sativa Japonica Group], gi|115467034|ref|NP_0...
446.0 [0..17] [481..14]
gi|92897162 - gi|92897162|gb|ABE93566.1| Lipase, class 3 [Medicago truncatula]
440.0 [0..16] [475..8]
gi|55831356 - gi|55831356|gb|AAV66577.1| lipase [Ricinus communis]
438.0 [0..13] [481..7]

Back

Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAGEYGGG GGGGGGFGGD FMVLRPDKGG IGDLFHLLWS CKVAENAAVD CPIGTEIAER  60
   61 RRRWALFVSL VAQMLLLWTK KPMALLGGGT EYWMNLLNEN GGSVFMLITN ALQGKVKMPD 120
  121 KSSINYRSCI GLLD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [135-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRIDLDEKIK PEDRNYHAAL SIMAAKLAYE NELVVRTVVQ NHWQMNFVGF YNCWNEFQED  60
   61 YTTQAFMVSD KAEDASLAVV AFCGTKPFDT EQWCADVDFS WYEIPGVGKV HGGFMKALGL 120
  121 QRNGGWPEQP TGAGDDGGSD KKPFAYYVIR ERLRAFLAEN PRARFVVAGH SLGGALAILF 180
  181 PTVLALHGEE DMLARLHGVY TFGQPRVGDE GLCRFMDGHL ATPVSRYFRF VYCNDIVPRV 240
  241 PYDDTALLFK HFGTCLYFDS FYKGHVTEEE PNKNYFSLLT VVPKYANAAW ELARSFVIGY 300
  301 VDGPEYGEGW LMRIARAAGL LLPGLPPHAP QDYVNATRLG AASLEPLR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.39794
Match: 5tglA
Description: A MODEL FOR INTERFACIAL ACTIVATION IN LIPASES FROM THE STRUCTURE OF A FUNGAL LIPASE-INHIBITOR COMPLEX
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle