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View Structure Prediction Details

Protein: gi|115448701, gi...
Organism: Oryza sativa Japonica Group
Length: 243 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115448701, gi....

Description E-value Query
Range
Subject
Range
ATPD_SORBI - ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1
210.0 [0..1] [243..1]

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Predicted Domain #1
Region A:
Residues: [1-172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLRLTSVT LRPAASPSSA AAPRSANFAR AAARGFPSLR LAPPRRRGDL ARRRAAADAA  60
   61 AEGYATALSE VASENGTLEA TVSDLEKLEK IFAEEAIAEF FDNPTVPRDE KAQLIDEIAK 120
  121 SSELQAHVVN FLNVVVDNGR AGLMTQIVRE FENAFNSLTG TEVATVTSVV QL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 2bo5A
Description: Bovine oligomycin sensitivity conferral protein N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [173-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESQDLAQIAQ QVQNLTGAKN VRVKTRIDPE LIAGFTIQYG RDGSSLIDMS VRKQIEEITS  60
   61 EFEMPAVTLD V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle