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View Structure Prediction Details

Protein: gi|215734888, gi...
Organism: Oryza sativa Japonica Group
Length: 543 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215734888, gi....

Description E-value Query
Range
Subject
Range
ROGFE_ARATH - Rop guanine nucleotide exchange factor 14 OS=Arabidopsis thaliana GN=ROPGEF14 PE=1 SV=1
717.0 [0..4] [528..6]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMKTLACCR RRPQDFSIDM DQEPDRVMTY NGLESCIINS SSYDDDSGLS ATTGADGCVT  60
   61 TDSVDDEVSS CSSSKDVSSS SFSSQCHPLR KQEEHSLY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-543]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELDTLSAVHL LPLKGKKPIT YTLSASDIET MKEKFGKLLL GDDASGGARG VCAALALSNA  60
   61 IINLSATIFG ELWKLEPLCE EKKVRWRKEM DWLLSPTTYM VELVPTKQNG ADGCTFEIMT 120
  121 PKARSDVNVN LPALQKLDSM LIEVLDSMVD TEYWYVESGS RANGRGKKNG LRQTKKWWLP 180
  181 SPRVPDIGLS QFQRNRLVFQ AKLVHQILKA AMSINEEVLL QIPIPPAVTD ALPKSGRAGL 240
  241 GEDLYHAITT EYIPIEEIFL SLSLKTEHTV LETMNRLEGA VFAWNQRISE EKSKKSPGRH 300
  301 SWNFMKDSSS ELDKMSMCIE RVETLMQLLK SRFPSLPPTF IEVVKIQYNV DVGHAIVEAY 360
  361 SRVLVGVAFS ILSRVAEILL EDDLIKKPNT PLATLKFDLS SDVYLAGITE TPPGHIRRSL 420
  421 MDQISLVDGS LDAVVRKKGV KQLRW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 178.0
Match: 2ntxA
Description: No description for 2ntxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle