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View Structure Prediction Details

Protein: gi|23305934
Organism: Oryza sativa
Length: 403 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23305934.

Description E-value Query
Range
Subject
Range
gi|100796 - gi|100796|pir||S16585 phosphoribulokinase (EC 2.7.1.19) - wheat
415.0 [0..1] [403..1]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISSLHATT SLHSPCTTNT SFRQNQVIFF TTRSNRRGST RYGGARTFQV SCSVDKPVVI  60
   61 GLAADSGCGK STFMRRLTSV FGGAAEPPKG GNPDSNTLIS DTTTVICLDD YHSLDRTGRK 120
  121 EKGVTALDPR ANDFDLMYEQ VKAIKEGKAI EKPIYNHVTG LLDPPELIQP PKIFVIEGLH 180
  181 PMFDERVRDL LDFSIYLDIS DEVKFAWKIQ RDMAERGHSL ESIKASIEAR KPDFDAFIDP 240
  241 QKQYADAVIE VLPTQLIPDD NEGKVLRVKL IMKEGVKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 2jeoA
Description: No description for 2jeoA was found.

Predicted Domain #2
Region A:
Residues: [279-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNPVYLFDEG SSITWVPCGR KLTCSYPGIK FAYGPDTYFG HEVSVLEMDG QFDRLDELIY  60
   61 VESHLSNLST KFYGEVTQQM LKHADFPGSN NGTGLFQTIV GLKIRDLYEQ IIAERAGAPT 120
  121 EAAKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 1bd3D
Description: Uracil PRTase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle