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View Structure Prediction Details

Protein: gi|41052799, gi|...
Organism: Oryza sativa Japonica Group
Length: 453 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|41052799, gi|....

Description E-value Query
Range
Subject
Range
gi|115932072, gi... - gi|115932072|ref|XP_001188803.1| PREDICTED: similar to Pigm protein [Strongylocentrotus purpuratus],...
386.0 [0..10] [451..10]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRNFWSMA AAAVGFRLVL VLFGGDLHLA SRPEVSTPLT SIRRLAEGYW LKQASMSPYS  60
   61 GSMYHGSPLL LLVLGPLTNK RSVGHHDHIY CSLIFVAVDF IAAMLIRATG RRLQIARNRN 120
  121 LKSLELTEAV SNSVNVSAGD IASLIYLWNP WAIVTCVGSC TSPIENLMVV IMIYGACSRL 180
  181 APLAAFGYVM ATHLSLYPAI LIVPIILLLG YGPDAPPTKV FRIKSSSASK TDVSDNDKSS 240
  241 SSRDVQQFLW KPVFHFILWM LFWTFYVLLL SSIVLNKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [279-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGLQEMFEKT YGFILTVKDL SPNIGVLWYF FAEVFDFFRS FFLIVFNMNI VFMVLPLAIR  60
   61 LKHRPCFLAF IYTAIVAILK SYPSVGDSAL YLGLLGLFAN ELAEMQFTFF LFFGYIGVSL 120
  121 LSPVMHNLWI WRGTGNANFY FATGLAYTCL QTVLVVESVS SMIKHDRKLR LLVTA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 78.769551
Match: PF06728.4
Description: No description for PF06728.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle