YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|115447269, gi...
Organism:	Oryza sativa Japonica Group
Length:	458 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115447269, gi....

Description	E-value	Query Range	Subject Range
gi\|115459258, gi... - gi\|70663912\|emb\|CAD41491.3\| OSJNBa0029H02.24 [Oryza sativa (japonica cultivar-group)], gi\|50926177\|r...	393.0	[0..7]	[458..5]
gi\|90265146, gi\|... - gi\|90265146\|emb\|CAC09514.2\| H0711G06.20 [Oryza sativa (indica cultivar-group)], gi\|116310757\|emb\|CAH...	393.0	[0..7]	[458..5]
Y2424_ARATH - BTB/POZ domain-containing protein At2g24240 OS=Arabidopsis thaliana GN=At2g24240 PE=2 SV=1	393.0	[0..1]	[458..1]
gi\|92887189, gi\|... - gi\|92887189\|gb\|ABE88707.1\| BTB/POZ [Medicago truncatula], gi\|92879244\|gb\|ABE85429.1\| BTB/POZ [Medica...	389.0	[0..5]	[458..5]
KCB1_MOUSE, KCNB... - Potassium voltage-gated channel subfamily B member 1 OS=Mus musculus GN=Kcnb1 PE=1 SV=1, (Q03717) Po...	273.0	[0..2]	[350..27]
KCNB2_BOVIN - Potassium voltage-gated channel subfamily B member 2 OS=Bos taurus GN=KCNB2 PE=2 SV=1	273.0	[0..2]	[350..31]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGKRGRVRL NVGGRVFETM ASTLASAGRD TMLGAMIDAS WNHGGGGDGD GEGGADEYFI  60
   61 DRDPECFAVL LDLLRTGGLH VPPHVADGVL CREALYYGLL DRVRAARWGP FDGDRLRLAA 120
  121 SVAGSAAGDG TAVRAAPDGG CCVAHGGAVR VYNWVMEERR AVHLDHAPVN DAAYLDEATL 180
  181 LVAARERPGT GRRDGGVAAF SALTGDLRHR FRVAHDRHVR SYTPGALAFD SRCKVFASCK 240
  241 GRFNEYGIGV WDCTTGEQAD FFYEPPGCAL GDADKLQWLD GTSTLMAATM FPRTDSSFIS 300
  301 LLDFRDKKNV AWSWSDVGTP ASLEDKHVLH AIAMEDGRSL CVINQYDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [349-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGFLDVRSSG GAGGVRWRSR SKLAARKKKA APRGEETCYP KLAAHGGQLF ASTNDTISVF  60
   61 SGPDHVLTST LRGSDAGAIC DFSIGGDRLF ALHNEENVVD VWETSPPPII

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.650	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.538	d.82.2	Frataxin-like
View	Download	0.538	d.82.2	Frataxin-like
View	Download	0.525	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.520	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.520	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.511	b.60.1	Lipocalins
View	Download	0.510	d.129.8	Description not found.
View	Download	0.499	d.82.2	Frataxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits